miRNA display CGI


Results 101 - 120 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 3' -53.8 NC_005261.1 + 65155 0.72 0.65343
Target:  5'- -gCGCCAGCGCgcaGAAGGUGcGCUc- -3'
miRNA:   3'- gaGCGGUCGCGauaUUUCCGC-CGAac -5'
23586 3' -53.8 NC_005261.1 + 65507 0.69 0.804399
Target:  5'- -cCGCCcGCGCggacGGGGCGGCg-- -3'
miRNA:   3'- gaGCGGuCGCGauauUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 66024 0.73 0.632269
Target:  5'- -cCGCCGGCGCgucGUAGucGGCGGCc-- -3'
miRNA:   3'- gaGCGGUCGCGa--UAUUu-CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 67079 0.68 0.848047
Target:  5'- gCUCGCUcgggcgguccauGGCGCgacgcgGUGcGGGCGGCg-- -3'
miRNA:   3'- -GAGCGG------------UCGCGa-----UAUuUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 67523 0.66 0.945047
Target:  5'- gUCGCCgcGGCGCccgc--GGCGGCg-- -3'
miRNA:   3'- gAGCGG--UCGCGauauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 68696 0.68 0.864096
Target:  5'- --gGCCGGCGCggacGAcGGCGGCg-- -3'
miRNA:   3'- gagCGGUCGCGaua-UUuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 68821 0.7 0.795133
Target:  5'- -gCGCCGGCGCgUGUGucggGAGGCcaGGCUc- -3'
miRNA:   3'- gaGCGGUCGCG-AUAU----UUCCG--CCGAac -5'
23586 3' -53.8 NC_005261.1 + 69508 0.71 0.695457
Target:  5'- -cCGCCGGCGCccgccgcGUGAGGGcCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGa------UAUUUCC-GCCGaac -5'
23586 3' -53.8 NC_005261.1 + 69571 0.68 0.871789
Target:  5'- -aCGCCGGCgGCgc---GGGCGGCggUGa -3'
miRNA:   3'- gaGCGGUCG-CGauauuUCCGCCGa-AC- -5'
23586 3' -53.8 NC_005261.1 + 69757 0.69 0.822422
Target:  5'- --gGCgAGCGCg--GGGGGCGGCg-- -3'
miRNA:   3'- gagCGgUCGCGauaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 70577 0.66 0.930143
Target:  5'- -gCGCCGcGCGCgg-AcGGGCGGCc-- -3'
miRNA:   3'- gaGCGGU-CGCGauaUuUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 70817 0.7 0.795133
Target:  5'- -cCGCgGGCGCUGcu--GGCGGCg-- -3'
miRNA:   3'- gaGCGgUCGCGAUauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 70833 0.7 0.798859
Target:  5'- -gCGCCGGCGCgcgcGUAcgccuccucagguccAGGGCGGCc-- -3'
miRNA:   3'- gaGCGGUCGCGa---UAU---------------UUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 70888 0.66 0.940333
Target:  5'- uUCGCgggccCGGCGCUGUuccuGCGGCUg- -3'
miRNA:   3'- gAGCG-----GUCGCGAUAuuucCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 71280 0.69 0.839704
Target:  5'- -gCGCCAGCaGCUu--GAGGUGGUa-- -3'
miRNA:   3'- gaGCGGUCG-CGAuauUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 71555 0.69 0.81709
Target:  5'- aUCGCCgccgaGGCGCUGgggcugcucgcggaGGAGGCGGCc-- -3'
miRNA:   3'- gAGCGG-----UCGCGAUa-------------UUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 72220 0.68 0.855376
Target:  5'- -gCGCCGGCGgUggcgcgcGUAAAGGCGGaCcUGg -3'
miRNA:   3'- gaGCGGUCGCgA-------UAUUUCCGCC-GaAC- -5'
23586 3' -53.8 NC_005261.1 + 72581 0.69 0.834601
Target:  5'- -gCGCCGGCGCgcgccagaggcgAGAGGCGGagUGg -3'
miRNA:   3'- gaGCGGUCGCGaua---------UUUCCGCCgaAC- -5'
23586 3' -53.8 NC_005261.1 + 72622 0.68 0.886478
Target:  5'- --gGCgGGCGC---AGGGGCGGCUUu -3'
miRNA:   3'- gagCGgUCGCGauaUUUCCGCCGAAc -5'
23586 3' -53.8 NC_005261.1 + 73352 0.66 0.945047
Target:  5'- -cCGcCCGGCGCcggcucAGGCGGCg-- -3'
miRNA:   3'- gaGC-GGUCGCGauauu-UCCGCCGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.