miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 3' -53.8 NC_005261.1 + 138123 0.72 0.674518
Target:  5'- -gCGCCGGCGC-----GGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGauauuUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 136801 0.66 0.924665
Target:  5'- -cCGCUGGUGCUG--GAGGCgGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGAUauUUCCG-CCGaac -5'
23586 3' -53.8 NC_005261.1 + 135852 0.74 0.564878
Target:  5'- -cCGCCAGCGCgccgcugcGGCGGCgcgUGg -3'
miRNA:   3'- gaGCGGUCGCGauauuu--CCGCCGa--AC- -5'
23586 3' -53.8 NC_005261.1 + 134899 0.66 0.935365
Target:  5'- -gCGCCgcGGCGCggGUGGAGGUGGa--- -3'
miRNA:   3'- gaGCGG--UCGCGa-UAUUUCCGCCgaac -5'
23586 3' -53.8 NC_005261.1 + 134847 0.69 0.83116
Target:  5'- -gUGCCGGCGCggcu--GGCGGCc-- -3'
miRNA:   3'- gaGCGGUCGCGauauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 134693 0.68 0.879251
Target:  5'- -cCGCC-GCGCUGcgcgccGAGGCGGCc-- -3'
miRNA:   3'- gaGCGGuCGCGAUau----UUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 134475 0.71 0.705847
Target:  5'- -cCGCgaGGCGCUA--GAGGCGGCg-- -3'
miRNA:   3'- gaGCGg-UCGCGAUauUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 134361 0.71 0.736575
Target:  5'- -cCGCC-GCGCg--GGGGGCGGCg-- -3'
miRNA:   3'- gaGCGGuCGCGauaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 132086 0.67 0.893465
Target:  5'- gUCGCCGcuGcCGCg--GAGGGCGGCc-- -3'
miRNA:   3'- gAGCGGU--C-GCGauaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 129723 0.66 0.924665
Target:  5'- -cCGCCGGCuGCagcggcAGGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCG-CGauau--UUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 128637 0.67 0.912943
Target:  5'- --aGCCGGCugGUUAaucuaaacaUGAGGGCGGCUg- -3'
miRNA:   3'- gagCGGUCG--CGAU---------AUUUCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 128560 0.72 0.683963
Target:  5'- aCUCGCUGGCGCUcUGGGgcccgguugcgcuGGCGGCa-- -3'
miRNA:   3'- -GAGCGGUCGCGAuAUUU-------------CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 128367 0.71 0.703774
Target:  5'- gCUCGCCGGgGCaggccggcuGGGGCgGGCUUGc -3'
miRNA:   3'- -GAGCGGUCgCGauau-----UUCCG-CCGAAC- -5'
23586 3' -53.8 NC_005261.1 + 128310 0.71 0.703774
Target:  5'- gCUCGCCGGgGCaggccggcuGGGGCgGGCUUGc -3'
miRNA:   3'- -GAGCGGUCgCGauau-----UUCCG-CCGAAC- -5'
23586 3' -53.8 NC_005261.1 + 128254 0.69 0.822422
Target:  5'- -gCGCCgaGGCGCguccgggAGGGGCgGGCUUGc -3'
miRNA:   3'- gaGCGG--UCGCGaua----UUUCCG-CCGAAC- -5'
23586 3' -53.8 NC_005261.1 + 128129 0.66 0.937383
Target:  5'- gUCGCCgccgcugccggGGCGCggcgggggucGGGCGGCUg- -3'
miRNA:   3'- gAGCGG-----------UCGCGauauu-----UCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 127888 0.68 0.85618
Target:  5'- -gCGCCGGCGCccgucGGGCccgggccugGGCUUGg -3'
miRNA:   3'- gaGCGGUCGCGauauuUCCG---------CCGAAC- -5'
23586 3' -53.8 NC_005261.1 + 126952 0.69 0.83116
Target:  5'- -gCGCCgGGCGCg---GGGGCGGCa-- -3'
miRNA:   3'- gaGCGG-UCGCGauauUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 126042 0.68 0.886478
Target:  5'- -gCGgCGGCGCUgcAUGGuGGCGGCg-- -3'
miRNA:   3'- gaGCgGUCGCGA--UAUUuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 125150 0.71 0.736575
Target:  5'- aUCGCCGGCGCcGUGAuugGGGCcGCg-- -3'
miRNA:   3'- gAGCGGUCGCGaUAUU---UCCGcCGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.