miRNA display CGI


Results 41 - 60 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 3' -53.8 NC_005261.1 + 106160 0.68 0.871789
Target:  5'- cCUCGCCGcuccGCGCUAauacuAGGgGGCg-- -3'
miRNA:   3'- -GAGCGGU----CGCGAUauu--UCCgCCGaac -5'
23586 3' -53.8 NC_005261.1 + 105136 0.72 0.65343
Target:  5'- -cCGCCGGCGCgcgcagGUccucgcggcucGAGGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGa-----UA-----------UUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 104994 0.66 0.935365
Target:  5'- -gCGcCCAGCGC-----GGGCGGCg-- -3'
miRNA:   3'- gaGC-GGUCGCGauauuUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 104568 0.69 0.822422
Target:  5'- gUCGcCCAGCGCU--GAGGGCuGCg-- -3'
miRNA:   3'- gAGC-GGUCGCGAuaUUUCCGcCGaac -5'
23586 3' -53.8 NC_005261.1 + 103844 0.67 0.902835
Target:  5'- gCUCGCCcuuGCGCgcgagccgcGGCGGCg-- -3'
miRNA:   3'- -GAGCGGu--CGCGauauuu---CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 103613 0.73 0.600548
Target:  5'- -gCGgCAGCGCg--GGAGGCGGCg-- -3'
miRNA:   3'- gaGCgGUCGCGauaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 103501 0.71 0.736575
Target:  5'- gUCGUCGGCGCcgcgGAcGGCGGCg-- -3'
miRNA:   3'- gAGCGGUCGCGaua-UUuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 102731 0.66 0.930143
Target:  5'- -cUGCCAGCGggGcAAGGGCGGgUg- -3'
miRNA:   3'- gaGCGGUCGCgaUaUUUCCGCCgAac -5'
23586 3' -53.8 NC_005261.1 + 102554 0.66 0.940333
Target:  5'- gCUCGCCGGCGggGgugcGGcCGGCa-- -3'
miRNA:   3'- -GAGCGGUCGCgaUauuuCC-GCCGaac -5'
23586 3' -53.8 NC_005261.1 + 101220 0.67 0.918932
Target:  5'- -cCGCCgcAGCGCguc-GAGGUGGCg-- -3'
miRNA:   3'- gaGCGG--UCGCGauauUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 100471 0.78 0.344223
Target:  5'- -gCGCCGGCGCUu---GGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGAuauuUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 100317 0.66 0.930143
Target:  5'- aCUCGCgCAGCGCgu----GGCGcGCg-- -3'
miRNA:   3'- -GAGCG-GUCGCGauauuuCCGC-CGaac -5'
23586 3' -53.8 NC_005261.1 + 99694 0.73 0.590013
Target:  5'- -gCGCCGGCGCUGUGcccGGCGcGCg-- -3'
miRNA:   3'- gaGCGGUCGCGAUAUuu-CCGC-CGaac -5'
23586 3' -53.8 NC_005261.1 + 99510 0.68 0.886478
Target:  5'- gCUCuGCgGGCGCUG--GGGGCgcgggccuggccGGCUUGg -3'
miRNA:   3'- -GAG-CGgUCGCGAUauUUCCG------------CCGAAC- -5'
23586 3' -53.8 NC_005261.1 + 99004 0.78 0.367869
Target:  5'- cCUCGCCGGCGCgcgcgagggccauGGCGGCUa- -3'
miRNA:   3'- -GAGCGGUCGCGauauuu-------CCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 98863 0.68 0.886478
Target:  5'- cCUCcCCGGcCGCcgauGAGGCGGCUg- -3'
miRNA:   3'- -GAGcGGUC-GCGauauUUCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 97811 0.68 0.848047
Target:  5'- -cCGCCGGCGCccccgcAGAcGGCGGCa-- -3'
miRNA:   3'- gaGCGGUCGCGaua---UUU-CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 96034 0.66 0.935365
Target:  5'- -cCGCgCGGCGCcGUGGA-GCGGCUc- -3'
miRNA:   3'- gaGCG-GUCGCGaUAUUUcCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 95055 0.68 0.845566
Target:  5'- cCUCGCCGGCGgcgccguaucgcgcCgcgAUGucGGCGGCg-- -3'
miRNA:   3'- -GAGCGGUCGC--------------Ga--UAUuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 94937 0.7 0.774207
Target:  5'- -cUGCCGGCGCcccccgcgggAAAGGCGGCc-- -3'
miRNA:   3'- gaGCGGUCGCGaua-------UUUCCGCCGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.