miRNA display CGI


Results 61 - 80 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 3' -53.8 NC_005261.1 + 94385 0.68 0.871789
Target:  5'- aUgGCCAGCGCggc---GGCGGCc-- -3'
miRNA:   3'- gAgCGGUCGCGauauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 93899 0.7 0.766429
Target:  5'- gUCGCCAGCGaCUGc-GGGcGCGGCg-- -3'
miRNA:   3'- gAGCGGUCGC-GAUauUUC-CGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 91726 0.66 0.922972
Target:  5'- gCUCGCCgcggcgggcuucgcGGCGCUcacgccGGCGGCg-- -3'
miRNA:   3'- -GAGCGG--------------UCGCGAuauuu-CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 91702 0.73 0.590013
Target:  5'- -cUGCCAGCGCgcagcGGAGGCGGUg-- -3'
miRNA:   3'- gaGCGGUCGCGaua--UUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 90829 0.67 0.918932
Target:  5'- -cCGCguGUGCacgGGGGGCGGCg-- -3'
miRNA:   3'- gaGCGguCGCGauaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 90221 0.69 0.83116
Target:  5'- gCUCuGCCGGCGggGcGAcGGCGGCUg- -3'
miRNA:   3'- -GAG-CGGUCGCgaUaUUuCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 89986 0.67 0.918932
Target:  5'- uUgGCCccGCGCUGcGGGGGCGGUa-- -3'
miRNA:   3'- gAgCGGu-CGCGAUaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 88955 0.68 0.877778
Target:  5'- cCUCgGCCAGCGCgcggcucGGgGGCUa- -3'
miRNA:   3'- -GAG-CGGUCGCGauauuu-CCgCCGAac -5'
23586 3' -53.8 NC_005261.1 + 88812 0.68 0.886478
Target:  5'- -aCGCCGGCgGCg----GGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCG-CGauauuUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 88187 0.68 0.889302
Target:  5'- uCUCGCggCGGCGCUGcaccgucgcgcGGCGGCUg- -3'
miRNA:   3'- -GAGCG--GUCGCGAUauuu-------CCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 88028 0.67 0.906701
Target:  5'- --gGCCGGCGgUGccUGGGGGCGGUc-- -3'
miRNA:   3'- gagCGGUCGCgAU--AUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 87547 0.68 0.886478
Target:  5'- gUCGCUGGCGCggauguUAUAcGGcGCGGaCUUGg -3'
miRNA:   3'- gAGCGGUCGCG------AUAUuUC-CGCC-GAAC- -5'
23586 3' -53.8 NC_005261.1 + 87361 0.68 0.85618
Target:  5'- -gCGCCAGCGCggcGAAGGCgccgaccugGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGauaUUUCCG---------CCGaac -5'
23586 3' -53.8 NC_005261.1 + 87057 0.66 0.924665
Target:  5'- gUCGCCAGCGCguucaUAUGAugcgccgccgcaGGGCcccgggGGCUUu -3'
miRNA:   3'- gAGCGGUCGCG-----AUAUU------------UCCG------CCGAAc -5'
23586 3' -53.8 NC_005261.1 + 86928 0.65 0.947754
Target:  5'- -gCGCCGGCGUgcgcgagguAGGUGGCc-- -3'
miRNA:   3'- gaGCGGUCGCGauauu----UCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 85526 0.67 0.918932
Target:  5'- gUCGCCGuccaugucGCGCgc---GGGCGGCUc- -3'
miRNA:   3'- gAGCGGU--------CGCGauauuUCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 83682 0.71 0.726416
Target:  5'- -gCGCgCAGCGCgccgccGAGGCGGCg-- -3'
miRNA:   3'- gaGCG-GUCGCGauau--UUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 83184 0.68 0.855376
Target:  5'- gCUCGCCGgccccgcgcagcuGCGCgggGccGGCGGCUa- -3'
miRNA:   3'- -GAGCGGU-------------CGCGauaUuuCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 83021 0.71 0.726416
Target:  5'- gUCGCCGGCGCccccggGAGGGCcGCUc- -3'
miRNA:   3'- gAGCGGUCGCGaua---UUUCCGcCGAac -5'
23586 3' -53.8 NC_005261.1 + 82859 0.68 0.848047
Target:  5'- gUUGCCAGCG-----AAGGCGGCg-- -3'
miRNA:   3'- gAGCGGUCGCgauauUUCCGCCGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.