miRNA display CGI


Results 81 - 100 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 3' -53.8 NC_005261.1 + 82824 0.68 0.886478
Target:  5'- --aGCCGGCGCgccGUAGAugcagucucagcGGCGGCg-- -3'
miRNA:   3'- gagCGGUCGCGa--UAUUU------------CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 81371 0.66 0.924665
Target:  5'- -gCGCCAGCGCgauca--GCGGCa-- -3'
miRNA:   3'- gaGCGGUCGCGauauuucCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 79888 0.72 0.685011
Target:  5'- aCUgGCCGGCGCggcuccgcGAGGCGGUg-- -3'
miRNA:   3'- -GAgCGGUCGCGauau----UUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 79667 0.66 0.946862
Target:  5'- gCUCGCCgcucgcggccacgacGGCGCag-GAgcccGGGCGGCg-- -3'
miRNA:   3'- -GAGCGG---------------UCGCGauaUU----UCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 79458 0.69 0.839704
Target:  5'- gCUgGCCGGCGCgcUGGGGGC-GCUc- -3'
miRNA:   3'- -GAgCGGUCGCGauAUUUCCGcCGAac -5'
23586 3' -53.8 NC_005261.1 + 79290 0.71 0.736575
Target:  5'- gCUgGCCgAGCGCUucc-GGGCGGCg-- -3'
miRNA:   3'- -GAgCGG-UCGCGAuauuUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 78828 0.67 0.912943
Target:  5'- -gCGCCGGCGCc-----GGCGGCc-- -3'
miRNA:   3'- gaGCGGUCGCGauauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 78538 0.67 0.912943
Target:  5'- -cUGCCcggAGCGCgugcuggccGAGGGCGGCUUc -3'
miRNA:   3'- gaGCGG---UCGCGaua------UUUCCGCCGAAc -5'
23586 3' -53.8 NC_005261.1 + 77447 0.68 0.864096
Target:  5'- uCUCGgCGGUGCUGcgcgcGGCGGCg-- -3'
miRNA:   3'- -GAGCgGUCGCGAUauuu-CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 76129 0.68 0.879251
Target:  5'- -gCGCCGGCGCccgucGUGGAggucguGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGa----UAUUU------CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 75671 0.67 0.912943
Target:  5'- -gCGCCggGGCGC-AUGcuGGCGGCg-- -3'
miRNA:   3'- gaGCGG--UCGCGaUAUuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 75547 0.68 0.883616
Target:  5'- -gCGCCGGCGCgugcagcuGGCGGacgUGg -3'
miRNA:   3'- gaGCGGUCGCGauauuu--CCGCCga-AC- -5'
23586 3' -53.8 NC_005261.1 + 75293 0.66 0.942248
Target:  5'- cCUCGCCGGUGCggggcugccugccgGUGggcuAGGGCGcGCg-- -3'
miRNA:   3'- -GAGCGGUCGCGa-------------UAU----UUCCGC-CGaac -5'
23586 3' -53.8 NC_005261.1 + 74780 0.69 0.822422
Target:  5'- cCUCGCgGGCGCUcgGcGGGcGCGGCc-- -3'
miRNA:   3'- -GAGCGgUCGCGAuaU-UUC-CGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 74224 0.67 0.893465
Target:  5'- gCUCaCCuacGCGCUGau-GGGCGGCUa- -3'
miRNA:   3'- -GAGcGGu--CGCGAUauuUCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 73352 0.66 0.945047
Target:  5'- -cCGcCCGGCGCcggcucAGGCGGCg-- -3'
miRNA:   3'- gaGC-GGUCGCGauauu-UCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 72622 0.68 0.886478
Target:  5'- --gGCgGGCGC---AGGGGCGGCUUu -3'
miRNA:   3'- gagCGgUCGCGauaUUUCCGCCGAAc -5'
23586 3' -53.8 NC_005261.1 + 72581 0.69 0.834601
Target:  5'- -gCGCCGGCGCgcgccagaggcgAGAGGCGGagUGg -3'
miRNA:   3'- gaGCGGUCGCGaua---------UUUCCGCCgaAC- -5'
23586 3' -53.8 NC_005261.1 + 72220 0.68 0.855376
Target:  5'- -gCGCCGGCGgUggcgcgcGUAAAGGCGGaCcUGg -3'
miRNA:   3'- gaGCGGUCGCgA-------UAUUUCCGCC-GaAC- -5'
23586 3' -53.8 NC_005261.1 + 71555 0.69 0.81709
Target:  5'- aUCGCCgccgaGGCGCUGgggcugcucgcggaGGAGGCGGCc-- -3'
miRNA:   3'- gAGCGG-----UCGCGAUa-------------UUUCCGCCGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.