miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 3' -53.8 NC_005261.1 + 22327 0.71 0.712049
Target:  5'- --gGCCGGCGCUGacgacggcggggaGGAGGCGGCg-- -3'
miRNA:   3'- gagCGGUCGCGAUa------------UUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 138123 0.72 0.674518
Target:  5'- -gCGCCGGCGC-----GGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGauauuUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 79888 0.72 0.685011
Target:  5'- aCUgGCCGGCGCggcuccgcGAGGCGGUg-- -3'
miRNA:   3'- -GAgCGGUCGCGauau----UUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 4244 0.71 0.695457
Target:  5'- -cCGCCGGgGCUGaGGAGGuCGGCg-- -3'
miRNA:   3'- gaGCGGUCgCGAUaUUUCC-GCCGaac -5'
23586 3' -53.8 NC_005261.1 + 69508 0.71 0.695457
Target:  5'- -cCGCCGGCGCccgccgcGUGAGGGcCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGa------UAUUUCC-GCCGaac -5'
23586 3' -53.8 NC_005261.1 + 61370 0.71 0.695457
Target:  5'- cCUCGCCgGGCGCc----AGGCGGCg-- -3'
miRNA:   3'- -GAGCGG-UCGCGauauuUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 128310 0.71 0.703774
Target:  5'- gCUCGCCGGgGCaggccggcuGGGGCgGGCUUGc -3'
miRNA:   3'- -GAGCGGUCgCGauau-----UUCCG-CCGAAC- -5'
23586 3' -53.8 NC_005261.1 + 128367 0.71 0.703774
Target:  5'- gCUCGCCGGgGCaggccggcuGGGGCgGGCUUGc -3'
miRNA:   3'- -GAGCGGUCgCGauau-----UUCCG-CCGAAC- -5'
23586 3' -53.8 NC_005261.1 + 134475 0.71 0.705847
Target:  5'- -cCGCgaGGCGCUA--GAGGCGGCg-- -3'
miRNA:   3'- gaGCGg-UCGCGAUauUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 440 0.72 0.674518
Target:  5'- -gCGCCGGCGC-----GGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGauauuUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 37848 0.72 0.674518
Target:  5'- -aCGgCGGCGUgGUGGAGGCGGCc-- -3'
miRNA:   3'- gaGCgGUCGCGaUAUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 18866 0.72 0.674518
Target:  5'- uUCgGCCGGgGUUGggGAGGGCgGGCUUGg -3'
miRNA:   3'- gAG-CGGUCgCGAUa-UUUCCG-CCGAAC- -5'
23586 3' -53.8 NC_005261.1 + 99004 0.78 0.367869
Target:  5'- cCUCGCCGGCGCgcgcgagggccauGGCGGCUa- -3'
miRNA:   3'- -GAGCGGUCGCGauauuu-------CCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 5771 0.77 0.394351
Target:  5'- -cUGCCGGCGCg--GAGGGCGGCc-- -3'
miRNA:   3'- gaGCGGUCGCGauaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 31115 0.75 0.497513
Target:  5'- gUCGCCGGCGCggu--GGcGCGGCUg- -3'
miRNA:   3'- gAGCGGUCGCGauauuUC-CGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 135852 0.74 0.564878
Target:  5'- -cCGCCAGCGCgccgcugcGGCGGCgcgUGg -3'
miRNA:   3'- gaGCGGUCGCGauauuu--CCGCCGa--AC- -5'
23586 3' -53.8 NC_005261.1 + 5618 0.74 0.569049
Target:  5'- -gCGCCAGCGCccccu-GGCGGCUc- -3'
miRNA:   3'- gaGCGGUCGCGauauuuCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 91702 0.73 0.590013
Target:  5'- -cUGCCAGCGCgcagcGGAGGCGGUg-- -3'
miRNA:   3'- gaGCGGUCGCGaua--UUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 99694 0.73 0.590013
Target:  5'- -gCGCCGGCGCUGUGcccGGCGcGCg-- -3'
miRNA:   3'- gaGCGGUCGCGAUAUuu-CCGC-CGaac -5'
23586 3' -53.8 NC_005261.1 + 16597 0.73 0.59317
Target:  5'- gCUCGCCGGCgGCggccgccgagcggcgGGAGGCGGCg-- -3'
miRNA:   3'- -GAGCGGUCG-CGaua------------UUUCCGCCGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.