miRNA display CGI


Results 41 - 60 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 3' -53.8 NC_005261.1 + 5618 0.74 0.569049
Target:  5'- -gCGCCAGCGCccccu-GGCGGCUc- -3'
miRNA:   3'- gaGCGGUCGCGauauuuCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 135852 0.74 0.564878
Target:  5'- -cCGCCAGCGCgccgcugcGGCGGCgcgUGg -3'
miRNA:   3'- gaGCGGUCGCGauauuu--CCGCCGa--AC- -5'
23586 3' -53.8 NC_005261.1 + 31115 0.75 0.497513
Target:  5'- gUCGCCGGCGCggu--GGcGCGGCUg- -3'
miRNA:   3'- gAGCGGUCGCGauauuUC-CGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 5771 0.77 0.394351
Target:  5'- -cUGCCGGCGCg--GAGGGCGGCc-- -3'
miRNA:   3'- gaGCGGUCGCGauaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 99004 0.78 0.367869
Target:  5'- cCUCGCCGGCGCgcgcgagggccauGGCGGCUa- -3'
miRNA:   3'- -GAGCGGUCGCGauauuu-------CCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 4244 0.71 0.695457
Target:  5'- -cCGCCGGgGCUGaGGAGGuCGGCg-- -3'
miRNA:   3'- gaGCGGUCgCGAUaUUUCC-GCCGaac -5'
23586 3' -53.8 NC_005261.1 + 69508 0.71 0.695457
Target:  5'- -cCGCCGGCGCccgccgcGUGAGGGcCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGa------UAUUUCC-GCCGaac -5'
23586 3' -53.8 NC_005261.1 + 52839 0.7 0.786659
Target:  5'- gCUCGCgGGCGCcuaccagaagcccGAGGGCGGCg-- -3'
miRNA:   3'- -GAGCGgUCGCGaua----------UUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 36618 0.7 0.785709
Target:  5'- -gCGCgagaGGCGCUA--GAGGCGGCa-- -3'
miRNA:   3'- gaGCGg---UCGCGAUauUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 94937 0.7 0.774207
Target:  5'- -cUGCCGGCGCcccccgcgggAAAGGCGGCc-- -3'
miRNA:   3'- gaGCGGUCGCGaua-------UUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 79290 0.71 0.736575
Target:  5'- gCUgGCCgAGCGCUucc-GGGCGGCg-- -3'
miRNA:   3'- -GAgCGG-UCGCGAuauuUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 43168 0.71 0.736575
Target:  5'- gCUCGCgGGCGUgcauggcgGAGGGCGGUcUGc -3'
miRNA:   3'- -GAGCGgUCGCGaua-----UUUCCGCCGaAC- -5'
23586 3' -53.8 NC_005261.1 + 3925 0.71 0.736575
Target:  5'- -gCuCCAGCGCggcGAAGGCGGCgacgUGg -3'
miRNA:   3'- gaGcGGUCGCGauaUUUCCGCCGa---AC- -5'
23586 3' -53.8 NC_005261.1 + 8480 0.71 0.71617
Target:  5'- gUCGCCGGUGCU--GAAGGCcgGGCc-- -3'
miRNA:   3'- gAGCGGUCGCGAuaUUUCCG--CCGaac -5'
23586 3' -53.8 NC_005261.1 + 112493 0.71 0.715141
Target:  5'- aUCGCCgAGCGCggcccgGUgggagaggggggaGAGGGgGGCUUGa -3'
miRNA:   3'- gAGCGG-UCGCGa-----UA-------------UUUCCgCCGAAC- -5'
23586 3' -53.8 NC_005261.1 + 22327 0.71 0.712049
Target:  5'- --gGCCGGCGCUGacgacggcggggaGGAGGCGGCg-- -3'
miRNA:   3'- gagCGGUCGCGAUa------------UUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 134475 0.71 0.705847
Target:  5'- -cCGCgaGGCGCUA--GAGGCGGCg-- -3'
miRNA:   3'- gaGCGg-UCGCGAUauUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 128367 0.71 0.703774
Target:  5'- gCUCGCCGGgGCaggccggcuGGGGCgGGCUUGc -3'
miRNA:   3'- -GAGCGGUCgCGauau-----UUCCG-CCGAAC- -5'
23586 3' -53.8 NC_005261.1 + 128310 0.71 0.703774
Target:  5'- gCUCGCCGGgGCaggccggcuGGGGCgGGCUUGc -3'
miRNA:   3'- -GAGCGGUCgCGauau-----UUCCG-CCGAAC- -5'
23586 3' -53.8 NC_005261.1 + 61370 0.71 0.695457
Target:  5'- cCUCGCCgGGCGCc----AGGCGGCg-- -3'
miRNA:   3'- -GAGCGG-UCGCGauauuUCCGCCGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.