miRNA display CGI


Results 61 - 80 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 3' -53.8 NC_005261.1 + 134475 0.71 0.705847
Target:  5'- -cCGCgaGGCGCUA--GAGGCGGCg-- -3'
miRNA:   3'- gaGCGg-UCGCGAUauUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 22327 0.71 0.712049
Target:  5'- --gGCCGGCGCUGacgacggcggggaGGAGGCGGCg-- -3'
miRNA:   3'- gagCGGUCGCGAUa------------UUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 70817 0.7 0.795133
Target:  5'- -cCGCgGGCGCUGcu--GGCGGCg-- -3'
miRNA:   3'- gaGCGgUCGCGAUauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 61219 0.69 0.804399
Target:  5'- -gCGUCGGCGag--GAGGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCgauaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 62240 0.69 0.804399
Target:  5'- -gCGuCCAGCGC---GAGGGCGGCc-- -3'
miRNA:   3'- gaGC-GGUCGCGauaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 5691 0.69 0.804399
Target:  5'- cCUCGCCcucGCGCgc-GAGGGCGcGCUc- -3'
miRNA:   3'- -GAGCGGu--CGCGauaUUUCCGC-CGAac -5'
23586 3' -53.8 NC_005261.1 + 65507 0.69 0.804399
Target:  5'- -cCGCCcGCGCggacGGGGCGGCg-- -3'
miRNA:   3'- gaGCGGuCGCGauauUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 20930 0.69 0.813499
Target:  5'- -gCGCCGGgGCUGggcucGAGGGCGGgCUc- -3'
miRNA:   3'- gaGCGGUCgCGAUa----UUUCCGCC-GAac -5'
23586 3' -53.8 NC_005261.1 + 44396 0.69 0.813499
Target:  5'- gCUCGgCGGCGCcgccc-GGCGGCUg- -3'
miRNA:   3'- -GAGCgGUCGCGauauuuCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 71555 0.69 0.81709
Target:  5'- aUCGCCgccgaGGCGCUGgggcugcucgcggaGGAGGCGGCc-- -3'
miRNA:   3'- gAGCGG-----UCGCGAUa-------------UUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 68821 0.7 0.795133
Target:  5'- -gCGCCGGCGCgUGUGucggGAGGCcaGGCUc- -3'
miRNA:   3'- gaGCGGUCGCG-AUAU----UUCCG--CCGAac -5'
23586 3' -53.8 NC_005261.1 + 33862 0.7 0.795133
Target:  5'- cCUCcgGCCGGCgGCUGUucucgcGGGCGGCg-- -3'
miRNA:   3'- -GAG--CGGUCG-CGAUAuu----UCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 112493 0.71 0.715141
Target:  5'- aUCGCCgAGCGCggcccgGUgggagaggggggaGAGGGgGGCUUGa -3'
miRNA:   3'- gAGCGG-UCGCGa-----UA-------------UUUCCgCCGAAC- -5'
23586 3' -53.8 NC_005261.1 + 8480 0.71 0.71617
Target:  5'- gUCGCCGGUGCU--GAAGGCcgGGCc-- -3'
miRNA:   3'- gAGCGGUCGCGAuaUUUCCG--CCGaac -5'
23586 3' -53.8 NC_005261.1 + 3925 0.71 0.736575
Target:  5'- -gCuCCAGCGCggcGAAGGCGGCgacgUGg -3'
miRNA:   3'- gaGcGGUCGCGauaUUUCCGCCGa---AC- -5'
23586 3' -53.8 NC_005261.1 + 43168 0.71 0.736575
Target:  5'- gCUCGCgGGCGUgcauggcgGAGGGCGGUcUGc -3'
miRNA:   3'- -GAGCGgUCGCGaua-----UUUCCGCCGaAC- -5'
23586 3' -53.8 NC_005261.1 + 79290 0.71 0.736575
Target:  5'- gCUgGCCgAGCGCUucc-GGGCGGCg-- -3'
miRNA:   3'- -GAgCGG-UCGCGAuauuUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 94937 0.7 0.774207
Target:  5'- -cUGCCGGCGCcccccgcgggAAAGGCGGCc-- -3'
miRNA:   3'- gaGCGGUCGCGaua-------UUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 36618 0.7 0.785709
Target:  5'- -gCGCgagaGGCGCUA--GAGGCGGCa-- -3'
miRNA:   3'- gaGCGg---UCGCGAUauUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 52839 0.7 0.786659
Target:  5'- gCUCGCgGGCGCcuaccagaagcccGAGGGCGGCg-- -3'
miRNA:   3'- -GAGCGgUCGCGaua----------UUUCCGCCGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.