miRNA display CGI


Results 81 - 100 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 3' -53.8 NC_005261.1 + 90221 0.69 0.83116
Target:  5'- gCUCuGCCGGCGggGcGAcGGCGGCUg- -3'
miRNA:   3'- -GAG-CGGUCGCgaUaUUuCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 134847 0.69 0.83116
Target:  5'- -gUGCCGGCGCggcu--GGCGGCc-- -3'
miRNA:   3'- gaGCGGUCGCGauauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 72581 0.69 0.834601
Target:  5'- -gCGCCGGCGCgcgccagaggcgAGAGGCGGagUGg -3'
miRNA:   3'- gaGCGGUCGCGaua---------UUUCCGCCgaAC- -5'
23586 3' -53.8 NC_005261.1 + 79458 0.69 0.839704
Target:  5'- gCUgGCCGGCGCgcUGGGGGC-GCUc- -3'
miRNA:   3'- -GAgCGGUCGCGauAUUUCCGcCGAac -5'
23586 3' -53.8 NC_005261.1 + 95055 0.68 0.845566
Target:  5'- cCUCGCCGGCGgcgccguaucgcgcCgcgAUGucGGCGGCg-- -3'
miRNA:   3'- -GAGCGGUCGC--------------Ga--UAUuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 57945 0.68 0.848047
Target:  5'- -aCGCCAcgcacGUGCUGUc-GGGCGGCcUGg -3'
miRNA:   3'- gaGCGGU-----CGCGAUAuuUCCGCCGaAC- -5'
23586 3' -53.8 NC_005261.1 + 72220 0.68 0.855376
Target:  5'- -gCGCCGGCGgUggcgcgcGUAAAGGCGGaCcUGg -3'
miRNA:   3'- gaGCGGUCGCgA-------UAUUUCCGCC-GaAC- -5'
23586 3' -53.8 NC_005261.1 + 71555 0.69 0.81709
Target:  5'- aUCGCCgccgaGGCGCUGgggcugcucgcggaGGAGGCGGCc-- -3'
miRNA:   3'- gAGCGG-----UCGCGAUa-------------UUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 44396 0.69 0.813499
Target:  5'- gCUCGgCGGCGCcgccc-GGCGGCUg- -3'
miRNA:   3'- -GAGCgGUCGCGauauuuCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 20930 0.69 0.813499
Target:  5'- -gCGCCGGgGCUGggcucGAGGGCGGgCUc- -3'
miRNA:   3'- gaGCGGUCgCGAUa----UUUCCGCC-GAac -5'
23586 3' -53.8 NC_005261.1 + 36618 0.7 0.785709
Target:  5'- -gCGCgagaGGCGCUA--GAGGCGGCa-- -3'
miRNA:   3'- gaGCGg---UCGCGAUauUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 52839 0.7 0.786659
Target:  5'- gCUCGCgGGCGCcuaccagaagcccGAGGGCGGCg-- -3'
miRNA:   3'- -GAGCGgUCGCGaua----------UUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 33862 0.7 0.795133
Target:  5'- cCUCcgGCCGGCgGCUGUucucgcGGGCGGCg-- -3'
miRNA:   3'- -GAG--CGGUCG-CGAUAuu----UCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 68821 0.7 0.795133
Target:  5'- -gCGCCGGCGCgUGUGucggGAGGCcaGGCUc- -3'
miRNA:   3'- gaGCGGUCGCG-AUAU----UUCCG--CCGAac -5'
23586 3' -53.8 NC_005261.1 + 70817 0.7 0.795133
Target:  5'- -cCGCgGGCGCUGcu--GGCGGCg-- -3'
miRNA:   3'- gaGCGgUCGCGAUauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 61219 0.69 0.804399
Target:  5'- -gCGUCGGCGag--GAGGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCgauaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 62240 0.69 0.804399
Target:  5'- -gCGuCCAGCGC---GAGGGCGGCc-- -3'
miRNA:   3'- gaGC-GGUCGCGauaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 5691 0.69 0.804399
Target:  5'- cCUCGCCcucGCGCgc-GAGGGCGcGCUc- -3'
miRNA:   3'- -GAGCGGu--CGCGauaUUUCCGC-CGAac -5'
23586 3' -53.8 NC_005261.1 + 65507 0.69 0.804399
Target:  5'- -cCGCCcGCGCggacGGGGCGGCg-- -3'
miRNA:   3'- gaGCGGuCGCGauauUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 83184 0.68 0.855376
Target:  5'- gCUCGCCGgccccgcgcagcuGCGCgggGccGGCGGCUa- -3'
miRNA:   3'- -GAGCGGU-------------CGCGauaUuuCCGCCGAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.