Results 121 - 140 of 215 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23586 | 3' | -53.8 | NC_005261.1 | + | 2670 | 0.66 | 0.924665 |
Target: 5'- -cCGCC-GCGCUGgGGAcccGGCGGCg-- -3' miRNA: 3'- gaGCGGuCGCGAUaUUU---CCGCCGaac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 91726 | 0.66 | 0.922972 |
Target: 5'- gCUCGCCgcggcgggcuucgcGGCGCUcacgccGGCGGCg-- -3' miRNA: 3'- -GAGCGG--------------UCGCGAuauuu-CCGCCGaac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 112917 | 0.67 | 0.918932 |
Target: 5'- -cUGCguGCGCgagggcGAGGGCGGCg-- -3' miRNA: 3'- gaGCGguCGCGaua---UUUCCGCCGaac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 85526 | 0.67 | 0.918932 |
Target: 5'- gUCGCCGuccaugucGCGCgc---GGGCGGCUc- -3' miRNA: 3'- gAGCGGU--------CGCGauauuUCCGCCGAac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 123903 | 0.67 | 0.918932 |
Target: 5'- --gGCCGcCGCUGUGGGGuGCGGCc-- -3' miRNA: 3'- gagCGGUcGCGAUAUUUC-CGCCGaac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 101220 | 0.67 | 0.918932 |
Target: 5'- -cCGCCgcAGCGCguc-GAGGUGGCg-- -3' miRNA: 3'- gaGCGG--UCGCGauauUUCCGCCGaac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 63129 | 0.67 | 0.918932 |
Target: 5'- gCUCcCCGGUGCcg-GGGGGCuGCUUGa -3' miRNA: 3'- -GAGcGGUCGCGauaUUUCCGcCGAAC- -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 43187 | 0.66 | 0.930143 |
Target: 5'- -cCGCCGGCGaggcAGAGGUGGUg-- -3' miRNA: 3'- gaGCGGUCGCgauaUUUCCGCCGaac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 59481 | 0.66 | 0.930143 |
Target: 5'- -gCGCCGGCGCggccgccgcgccagcGGCGGCg-- -3' miRNA: 3'- gaGCGGUCGCGauauuu---------CCGCCGaac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 3508 | 0.66 | 0.932263 |
Target: 5'- -cCGCCAGCGCggccgccuccAGcGCGGCg-- -3' miRNA: 3'- gaGCGGUCGCGauauu-----UC-CGCCGaac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 109617 | 1.08 | 0.004337 |
Target: 5'- gCUCGCCAGCGCUAUAAAGGCGGCUUGc -3' miRNA: 3'- -GAGCGGUCGCGAUAUUUCCGCCGAAC- -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 73352 | 0.66 | 0.945047 |
Target: 5'- -cCGcCCGGCGCcggcucAGGCGGCg-- -3' miRNA: 3'- gaGC-GGUCGCGauauu-UCCGCCGaac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 67523 | 0.66 | 0.945047 |
Target: 5'- gUCGCCgcGGCGCccgc--GGCGGCg-- -3' miRNA: 3'- gAGCGG--UCGCGauauuuCCGCCGaac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 107166 | 0.66 | 0.942248 |
Target: 5'- --gGCCAGCGCcuccgucucGGCGGCg-- -3' miRNA: 3'- gagCGGUCGCGauauuu---CCGCCGaac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 15843 | 0.66 | 0.940333 |
Target: 5'- aUCGCgAGCGCgcUAGAGgacgaggucGCGGCa-- -3' miRNA: 3'- gAGCGgUCGCGauAUUUC---------CGCCGaac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 34943 | 0.66 | 0.938869 |
Target: 5'- --gGCCGGCGCgacccgggcccGGCGGCcUGg -3' miRNA: 3'- gagCGGUCGCGauauuu-----CCGCCGaAC- -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 23612 | 0.66 | 0.937383 |
Target: 5'- gUCGCCgccgcugccggGGCGCggcgggggucGGGCGGCUg- -3' miRNA: 3'- gAGCGG-----------UCGCGauauu-----UCCGCCGAac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 104994 | 0.66 | 0.935365 |
Target: 5'- -gCGcCCAGCGC-----GGGCGGCg-- -3' miRNA: 3'- gaGC-GGUCGCGauauuUCCGCCGaac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 53109 | 0.66 | 0.935365 |
Target: 5'- -gCGCCgcGGCGCUGcGcgccgccaacAGGGCGGCg-- -3' miRNA: 3'- gaGCGG--UCGCGAUaU----------UUCCGCCGaac -5' |
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23586 | 3' | -53.8 | NC_005261.1 | + | 30382 | 0.66 | 0.935365 |
Target: 5'- -gCGCCgcGGCGCggGUGGAGGUGGa--- -3' miRNA: 3'- gaGCGG--UCGCGa-UAUUUCCGCCgaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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