miRNA display CGI


Results 1 - 20 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 3' -53.8 NC_005261.1 + 110167 0.66 0.945047
Target:  5'- -cCGCCAccGCGCcccccGGGCGGCa-- -3'
miRNA:   3'- gaGCGGU--CGCGauauuUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 91726 0.66 0.922972
Target:  5'- gCUCGCCgcggcgggcuucgcGGCGCUcacgccGGCGGCg-- -3'
miRNA:   3'- -GAGCGG--------------UCGCGAuauuu-CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 85526 0.67 0.918932
Target:  5'- gUCGCCGuccaugucGCGCgc---GGGCGGCUc- -3'
miRNA:   3'- gAGCGGU--------CGCGauauuUCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 109617 1.08 0.004337
Target:  5'- gCUCGCCAGCGCUAUAAAGGCGGCUUGc -3'
miRNA:   3'- -GAGCGGUCGCGAUAUUUCCGCCGAAC- -5'
23586 3' -53.8 NC_005261.1 + 15843 0.66 0.940333
Target:  5'- aUCGCgAGCGCgcUAGAGgacgaggucGCGGCa-- -3'
miRNA:   3'- gAGCGgUCGCGauAUUUC---------CGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 34943 0.66 0.938869
Target:  5'- --gGCCGGCGCgacccgggcccGGCGGCcUGg -3'
miRNA:   3'- gagCGGUCGCGauauuu-----CCGCCGaAC- -5'
23586 3' -53.8 NC_005261.1 + 104994 0.66 0.935365
Target:  5'- -gCGcCCAGCGC-----GGGCGGCg-- -3'
miRNA:   3'- gaGC-GGUCGCGauauuUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 53109 0.66 0.935365
Target:  5'- -gCGCCgcGGCGCUGcGcgccgccaacAGGGCGGCg-- -3'
miRNA:   3'- gaGCGG--UCGCGAUaU----------UUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 59481 0.66 0.930143
Target:  5'- -gCGCCGGCGCggccgccgcgccagcGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGauauuu---------CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 2670 0.66 0.924665
Target:  5'- -cCGCC-GCGCUGgGGAcccGGCGGCg-- -3'
miRNA:   3'- gaGCGGuCGCGAUaUUU---CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 106659 0.66 0.929607
Target:  5'- gCUCGCCGGCGCggucGUccagcgcgcgcccGAGGGCcGCg-- -3'
miRNA:   3'- -GAGCGGUCGCGa---UA-------------UUUCCGcCGaac -5'
23586 3' -53.8 NC_005261.1 + 3508 0.66 0.932263
Target:  5'- -cCGCCAGCGCggccgccuccAGcGCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGauauu-----UC-CGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 73352 0.66 0.945047
Target:  5'- -cCGcCCGGCGCcggcucAGGCGGCg-- -3'
miRNA:   3'- gaGC-GGUCGCGauauu-UCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 129723 0.66 0.924665
Target:  5'- -cCGCCGGCuGCagcggcAGGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCG-CGauau--UUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 67523 0.66 0.945047
Target:  5'- gUCGCCgcGGCGCccgc--GGCGGCg-- -3'
miRNA:   3'- gAGCGG--UCGCGauauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 30382 0.66 0.935365
Target:  5'- -gCGCCgcGGCGCggGUGGAGGUGGa--- -3'
miRNA:   3'- gaGCGG--UCGCGa-UAUUUCCGCCgaac -5'
23586 3' -53.8 NC_005261.1 + 32284 0.66 0.924665
Target:  5'- -cCGCUGGUGCUG--GAGGCgGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGAUauUUCCG-CCGaac -5'
23586 3' -53.8 NC_005261.1 + 112917 0.67 0.918932
Target:  5'- -cUGCguGCGCgagggcGAGGGCGGCg-- -3'
miRNA:   3'- gaGCGguCGCGaua---UUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 107166 0.66 0.942248
Target:  5'- --gGCCAGCGCcuccgucucGGCGGCg-- -3'
miRNA:   3'- gagCGGUCGCGauauuu---CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 23612 0.66 0.937383
Target:  5'- gUCGCCgccgcugccggGGCGCggcgggggucGGGCGGCUg- -3'
miRNA:   3'- gAGCGG-----------UCGCGauauu-----UCCGCCGAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.