miRNA display CGI


Results 41 - 60 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 3' -53.8 NC_005261.1 + 132086 0.67 0.893465
Target:  5'- gUCGCCGcuGcCGCg--GAGGGCGGCc-- -3'
miRNA:   3'- gAGCGGU--C-GCGauaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 91726 0.66 0.922972
Target:  5'- gCUCGCCgcggcgggcuucgcGGCGCUcacgccGGCGGCg-- -3'
miRNA:   3'- -GAGCGG--------------UCGCGAuauuu-CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 67523 0.66 0.945047
Target:  5'- gUCGCCgcGGCGCccgc--GGCGGCg-- -3'
miRNA:   3'- gAGCGG--UCGCGauauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 108598 0.67 0.893465
Target:  5'- cCUCGCCcacgggcaccAGCGCcuc--GGGCGGCa-- -3'
miRNA:   3'- -GAGCGG----------UCGCGauauuUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 73352 0.66 0.945047
Target:  5'- -cCGcCCGGCGCcggcucAGGCGGCg-- -3'
miRNA:   3'- gaGC-GGUCGCGauauu-UCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 13858 0.69 0.83116
Target:  5'- gUCGCCGGCGUcgcc--GGCGGCc-- -3'
miRNA:   3'- gAGCGGUCGCGauauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 15843 0.66 0.940333
Target:  5'- aUCGCgAGCGCgcUAGAGgacgaggucGCGGCa-- -3'
miRNA:   3'- gAGCGgUCGCGauAUUUC---------CGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 37178 0.68 0.848047
Target:  5'- -gCGCCugGGCGCUGcu--GGCGGCg-- -3'
miRNA:   3'- gaGCGG--UCGCGAUauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 97811 0.68 0.848047
Target:  5'- -cCGCCGGCGCccccgcAGAcGGCGGCa-- -3'
miRNA:   3'- gaGCGGUCGCGaua---UUU-CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 58272 0.68 0.871789
Target:  5'- gCUCGCC-GCGCUcacGGGGcCGGCg-- -3'
miRNA:   3'- -GAGCGGuCGCGAuauUUCC-GCCGaac -5'
23586 3' -53.8 NC_005261.1 + 41635 0.68 0.871789
Target:  5'- cCUCGgCGaccuugagguGCGC-GUGGAGGCGGCUc- -3'
miRNA:   3'- -GAGCgGU----------CGCGaUAUUUCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 35033 0.68 0.879251
Target:  5'- gUCGCUGGCGCgccgcccUAAcGGCGGCc-- -3'
miRNA:   3'- gAGCGGUCGCGau-----AUUuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 88812 0.68 0.886478
Target:  5'- -aCGCCGGCgGCg----GGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCG-CGauauuUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 103844 0.67 0.902835
Target:  5'- gCUCGCCcuuGCGCgcgagccgcGGCGGCg-- -3'
miRNA:   3'- -GAGCGGu--CGCGauauuu---CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 39992 0.67 0.906701
Target:  5'- -cCGCCGGCGUgcGUGAAGGCGuacgaGCa-- -3'
miRNA:   3'- gaGCGGUCGCGa-UAUUUCCGC-----CGaac -5'
23586 3' -53.8 NC_005261.1 + 63129 0.67 0.918932
Target:  5'- gCUCcCCGGUGCcg-GGGGGCuGCUUGa -3'
miRNA:   3'- -GAGcGGUCGCGauaUUUCCGcCGAAC- -5'
23586 3' -53.8 NC_005261.1 + 85526 0.67 0.918932
Target:  5'- gUCGCCGuccaugucGCGCgc---GGGCGGCUc- -3'
miRNA:   3'- gAGCGGU--------CGCGauauuUCCGCCGAac -5'
23586 3' -53.8 NC_005261.1 + 129723 0.66 0.924665
Target:  5'- -cCGCCGGCuGCagcggcAGGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCG-CGauau--UUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 59481 0.66 0.930143
Target:  5'- -gCGCCGGCGCggccgccgcgccagcGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGauauuu---------CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 104994 0.66 0.935365
Target:  5'- -gCGcCCAGCGC-----GGGCGGCg-- -3'
miRNA:   3'- gaGC-GGUCGCGauauuUCCGCCGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.