miRNA display CGI


Results 61 - 80 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 3' -53.8 NC_005261.1 + 88812 0.68 0.886478
Target:  5'- -aCGCCGGCgGCg----GGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCG-CGauauuUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 88955 0.68 0.877778
Target:  5'- cCUCgGCCAGCGCgcggcucGGgGGCUa- -3'
miRNA:   3'- -GAG-CGGUCGCGauauuu-CCgCCGAac -5'
23586 3' -53.8 NC_005261.1 + 34943 0.66 0.938869
Target:  5'- --gGCCGGCGCgacccgggcccGGCGGCcUGg -3'
miRNA:   3'- gagCGGUCGCGauauuu-----CCGCCGaAC- -5'
23586 3' -53.8 NC_005261.1 + 53109 0.66 0.935365
Target:  5'- -gCGCCgcGGCGCUGcGcgccgccaacAGGGCGGCg-- -3'
miRNA:   3'- gaGCGG--UCGCGAUaU----------UUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 43187 0.66 0.930143
Target:  5'- -cCGCCGGCGaggcAGAGGUGGUg-- -3'
miRNA:   3'- gaGCGGUCGCgauaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 32284 0.66 0.924665
Target:  5'- -cCGCUGGUGCUG--GAGGCgGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGAUauUUCCG-CCGaac -5'
23586 3' -53.8 NC_005261.1 + 123903 0.67 0.918932
Target:  5'- --gGCCGcCGCUGUGGGGuGCGGCc-- -3'
miRNA:   3'- gagCGGUcGCGAUAUUUC-CGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 119787 0.67 0.912943
Target:  5'- gUCGCguaccgCAGCGCggagcuGGGCGGCa-- -3'
miRNA:   3'- gAGCG------GUCGCGauauu-UCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 38304 0.67 0.906701
Target:  5'- -cCGCCugAGCGCgc--AGGGCGGCc-- -3'
miRNA:   3'- gaGCGG--UCGCGauauUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 52971 0.67 0.900868
Target:  5'- -gCGCCGGUGCggcgccggcaggcGGGGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGaua----------UUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 83021 0.71 0.726416
Target:  5'- gUCGCCGGCGCccccggGAGGGCcGCUc- -3'
miRNA:   3'- gAGCGGUCGCGaua---UUUCCGcCGAac -5'
23586 3' -53.8 NC_005261.1 + 134361 0.71 0.736575
Target:  5'- -cCGCC-GCGCg--GGGGGCGGCg-- -3'
miRNA:   3'- gaGCGGuCGCGauaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 2441 0.68 0.871789
Target:  5'- uCUCgGCCAGCGCcucgggGUcGAAGGCGaGCg-- -3'
miRNA:   3'- -GAG-CGGUCGCGa-----UA-UUUCCGC-CGaac -5'
23586 3' -53.8 NC_005261.1 + 68696 0.68 0.864096
Target:  5'- --gGCCGGCGCggacGAcGGCGGCg-- -3'
miRNA:   3'- gagCGGUCGCGaua-UUuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 37178 0.68 0.848047
Target:  5'- -gCGCCugGGCGCUGcu--GGCGGCg-- -3'
miRNA:   3'- gaGCGG--UCGCGAUauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 13858 0.69 0.83116
Target:  5'- gUCGCCGGCGUcgcc--GGCGGCc-- -3'
miRNA:   3'- gAGCGGUCGCGauauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 19935 0.69 0.822422
Target:  5'- cCUCGCUAGCGUccUGggcggggguGGGGCGGCc-- -3'
miRNA:   3'- -GAGCGGUCGCG--AUau-------UUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 17102 0.69 0.813499
Target:  5'- -gUGCCAGCGCUcgauguaguuGUAucgcGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGA----------UAUuu--CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 118841 0.7 0.776138
Target:  5'- -cCGCUcugcGGCGCg--GAGGGCGGCg-- -3'
miRNA:   3'- gaGCGG----UCGCGauaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 58465 0.7 0.766429
Target:  5'- aCUCGCCgGGCGCgUAUGAgccgcAGGcCGGCg-- -3'
miRNA:   3'- -GAGCGG-UCGCG-AUAUU-----UCC-GCCGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.