miRNA display CGI


Results 81 - 100 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 3' -53.8 NC_005261.1 + 94385 0.68 0.871789
Target:  5'- aUgGCCAGCGCggc---GGCGGCc-- -3'
miRNA:   3'- gAgCGGUCGCGauauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 51197 0.68 0.871789
Target:  5'- gCUCGCCAcgcccccgggcGCGCUGcugcuGGGCGcGCUa- -3'
miRNA:   3'- -GAGCGGU-----------CGCGAUauu--UCCGC-CGAac -5'
23586 3' -53.8 NC_005261.1 + 82859 0.68 0.848047
Target:  5'- gUUGCCAGCG-----AAGGCGGCg-- -3'
miRNA:   3'- gAGCGGUCGCgauauUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 71280 0.69 0.839704
Target:  5'- -gCGCCAGCaGCUu--GAGGUGGUa-- -3'
miRNA:   3'- gaGCGGUCG-CGAuauUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 104568 0.69 0.822422
Target:  5'- gUCGcCCAGCGCU--GAGGGCuGCg-- -3'
miRNA:   3'- gAGC-GGUCGCGAuaUUUCCGcCGaac -5'
23586 3' -53.8 NC_005261.1 + 23737 0.69 0.822422
Target:  5'- -gCGCCgaGGCGCguccgggAGGGGCgGGCUUGc -3'
miRNA:   3'- gaGCGG--UCGCGaua----UUUCCG-CCGAAC- -5'
23586 3' -53.8 NC_005261.1 + 118841 0.7 0.776138
Target:  5'- -cCGCUcugcGGCGCg--GAGGGCGGCg-- -3'
miRNA:   3'- gaGCGG----UCGCGauaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 58465 0.7 0.766429
Target:  5'- aCUCGCCgGGCGCgUAUGAgccgcAGGcCGGCg-- -3'
miRNA:   3'- -GAGCGG-UCGCG-AUAUU-----UCC-GCCGaac -5'
23586 3' -53.8 NC_005261.1 + 38304 0.67 0.906701
Target:  5'- -cCGCCugAGCGCgc--AGGGCGGCc-- -3'
miRNA:   3'- gaGCGG--UCGCGauauUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 105136 0.72 0.65343
Target:  5'- -cCGCCGGCGCgcgcagGUccucgcggcucGAGGGCGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGa-----UA-----------UUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 66024 0.73 0.632269
Target:  5'- -cCGCCGGCGCgucGUAGucGGCGGCc-- -3'
miRNA:   3'- gaGCGGUCGCGa--UAUUu-CCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 53020 0.75 0.517587
Target:  5'- gCUCGCCAGCGCUucc---GCGGCg-- -3'
miRNA:   3'- -GAGCGGUCGCGAuauuucCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 34943 0.66 0.938869
Target:  5'- --gGCCGGCGCgacccgggcccGGCGGCcUGg -3'
miRNA:   3'- gagCGGUCGCGauauuu-----CCGCCGaAC- -5'
23586 3' -53.8 NC_005261.1 + 53109 0.66 0.935365
Target:  5'- -gCGCCgcGGCGCUGcGcgccgccaacAGGGCGGCg-- -3'
miRNA:   3'- gaGCGG--UCGCGAUaU----------UUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 43187 0.66 0.930143
Target:  5'- -cCGCCGGCGaggcAGAGGUGGUg-- -3'
miRNA:   3'- gaGCGGUCGCgauaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 32284 0.66 0.924665
Target:  5'- -cCGCUGGUGCUG--GAGGCgGGCg-- -3'
miRNA:   3'- gaGCGGUCGCGAUauUUCCG-CCGaac -5'
23586 3' -53.8 NC_005261.1 + 123903 0.67 0.918932
Target:  5'- --gGCCGcCGCUGUGGGGuGCGGCc-- -3'
miRNA:   3'- gagCGGUcGCGAUAUUUC-CGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 119787 0.67 0.912943
Target:  5'- gUCGCguaccgCAGCGCggagcuGGGCGGCa-- -3'
miRNA:   3'- gAGCG------GUCGCGauauu-UCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 68821 0.7 0.795133
Target:  5'- -gCGCCGGCGCgUGUGucggGAGGCcaGGCUc- -3'
miRNA:   3'- gaGCGGUCGCG-AUAU----UUCCG--CCGAac -5'
23586 3' -53.8 NC_005261.1 + 134693 0.68 0.879251
Target:  5'- -cCGCC-GCGCUGcgcgccGAGGCGGCc-- -3'
miRNA:   3'- gaGCGGuCGCGAUau----UUCCGCCGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.