miRNA display CGI


Results 101 - 120 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 3' -53.8 NC_005261.1 + 69571 0.68 0.871789
Target:  5'- -aCGCCGGCgGCgc---GGGCGGCggUGa -3'
miRNA:   3'- gaGCGGUCG-CGauauuUCCGCCGa-AC- -5'
23586 3' -53.8 NC_005261.1 + 52587 0.66 0.945047
Target:  5'- -gCGgCGGCGCUucAUGGAccugcucaacGGCGGCUUc -3'
miRNA:   3'- gaGCgGUCGCGA--UAUUU----------CCGCCGAAc -5'
23586 3' -53.8 NC_005261.1 + 36831 0.66 0.945047
Target:  5'- -aCGCaagCGGCGCUGcUGcuGGCGGCcgUGg -3'
miRNA:   3'- gaGCG---GUCGCGAU-AUuuCCGCCGa-AC- -5'
23586 3' -53.8 NC_005261.1 + 79667 0.66 0.946862
Target:  5'- gCUCGCCgcucgcggccacgacGGCGCag-GAgcccGGGCGGCg-- -3'
miRNA:   3'- -GAGCGG---------------UCGCGauaUU----UCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 36618 0.7 0.785709
Target:  5'- -gCGCgagaGGCGCUA--GAGGCGGCa-- -3'
miRNA:   3'- gaGCGg---UCGCGAUauUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 86928 0.65 0.947754
Target:  5'- -gCGCCGGCGUgcgcgagguAGGUGGCc-- -3'
miRNA:   3'- gaGCGGUCGCGauauu----UCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 55403 0.68 0.871789
Target:  5'- gCUUGCC-GCGCgg-GAGGcGCGGCa-- -3'
miRNA:   3'- -GAGCGGuCGCGauaUUUC-CGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 20188 0.66 0.943191
Target:  5'- -cCGCCAGCGCgggcgucGCGGCc-- -3'
miRNA:   3'- gaGCGGUCGCGauauuucCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 106958 0.68 0.871789
Target:  5'- uCUCgGCCAGCGCcucgggGUcGAAGGCGaGCg-- -3'
miRNA:   3'- -GAG-CGGUCGCGa-----UA-UUUCCGC-CGaac -5'
23586 3' -53.8 NC_005261.1 + 40017 0.68 0.871789
Target:  5'- -cCGCC-GCGCUGccguGGCGGCg-- -3'
miRNA:   3'- gaGCGGuCGCGAUauuuCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 134693 0.68 0.879251
Target:  5'- -cCGCC-GCGCUGcgcgccGAGGCGGCc-- -3'
miRNA:   3'- gaGCGGuCGCGAUau----UUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 20852 0.68 0.879251
Target:  5'- -cCGCCgaagcAGCGCgccuccagGAGGGCGGcCUUGc -3'
miRNA:   3'- gaGCGG-----UCGCGaua-----UUUCCGCC-GAAC- -5'
23586 3' -53.8 NC_005261.1 + 4244 0.71 0.695457
Target:  5'- -cCGCCGGgGCUGaGGAGGuCGGCg-- -3'
miRNA:   3'- gaGCGGUCgCGAUaUUUCC-GCCGaac -5'
23586 3' -53.8 NC_005261.1 + 79888 0.72 0.685011
Target:  5'- aCUgGCCGGCGCggcuccgcGAGGCGGUg-- -3'
miRNA:   3'- -GAgCGGUCGCGauau----UUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 52839 0.7 0.786659
Target:  5'- gCUCGCgGGCGCcuaccagaagcccGAGGGCGGCg-- -3'
miRNA:   3'- -GAGCGgUCGCGaua----------UUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 75547 0.68 0.883616
Target:  5'- -gCGCCGGCGCgugcagcuGGCGGacgUGg -3'
miRNA:   3'- gaGCGGUCGCGauauuu--CCGCCga-AC- -5'
23586 3' -53.8 NC_005261.1 + 33862 0.7 0.795133
Target:  5'- cCUCcgGCCGGCgGCUGUucucgcGGGCGGCg-- -3'
miRNA:   3'- -GAG--CGGUCG-CGAUAuu----UCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 68821 0.7 0.795133
Target:  5'- -gCGCCGGCGCgUGUGucggGAGGCcaGGCUc- -3'
miRNA:   3'- gaGCGGUCGCG-AUAU----UUCCG--CCGAac -5'
23586 3' -53.8 NC_005261.1 + 60099 0.68 0.879251
Target:  5'- -gCGCCGGgGCggcGGGGGUGGCg-- -3'
miRNA:   3'- gaGCGGUCgCGauaUUUCCGCCGaac -5'
23586 3' -53.8 NC_005261.1 + 91702 0.73 0.590013
Target:  5'- -cUGCCAGCGCgcagcGGAGGCGGUg-- -3'
miRNA:   3'- gaGCGGUCGCGaua--UUUCCGCCGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.