miRNA display CGI


Results 81 - 100 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 5' -58.5 NC_005261.1 + 109864 0.66 0.839008
Target:  5'- cUCCUggGGGCAgCggGGCCCGcGgGCGGGc -3'
miRNA:   3'- -GGGG--UCUGUgGa-UUGGGCuCgCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 72846 0.66 0.839008
Target:  5'- gCCaGGGCGCCagcGCCCaGGCGUGGa -3'
miRNA:   3'- gGGgUCUGUGGau-UGGGcUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 17154 0.66 0.822748
Target:  5'- aCgUAGAC-CgUcACCCGcGGCGCGGGc -3'
miRNA:   3'- gGgGUCUGuGgAuUGGGC-UCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 29886 0.66 0.822748
Target:  5'- gCCgCCAG-CGCCcgGGCCCGcggcAGCGCGcGa -3'
miRNA:   3'- -GG-GGUCuGUGGa-UUGGGC----UCGCGC-Cc -5'
23586 5' -58.5 NC_005261.1 + 31450 0.66 0.826054
Target:  5'- gCCCGGcgaggacgaGCGCCggcGGCCUGAGUggccgccggugcgcgGCGGGc -3'
miRNA:   3'- gGGGUC---------UGUGGa--UUGGGCUCG---------------CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 109062 0.66 0.838212
Target:  5'- gCgCCGGGC-CCUGGCCUuGGCuggauccGCGGGc -3'
miRNA:   3'- -GgGGUCUGuGGAUUGGGcUCG-------CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 84845 0.66 0.839008
Target:  5'- gCCCAG-CACC--ACCgCGGGcCGCGuGGc -3'
miRNA:   3'- gGGGUCuGUGGauUGG-GCUC-GCGC-CC- -5'
23586 5' -58.5 NC_005261.1 + 52243 0.66 0.830963
Target:  5'- gCCCCGucggcGGCGCa--GCUCGAGCGCGc- -3'
miRNA:   3'- -GGGGU-----CUGUGgauUGGGCUCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 109253 0.66 0.839008
Target:  5'- gCCCCAGAguCAUCgguCCCcGGCuCGGGc -3'
miRNA:   3'- -GGGGUCU--GUGGauuGGGcUCGcGCCC- -5'
23586 5' -58.5 NC_005261.1 + 96935 0.66 0.839008
Target:  5'- aCCCgAGACGCCca---CGGGCgcaucgGCGGGg -3'
miRNA:   3'- -GGGgUCUGUGGauuggGCUCG------CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 54465 0.66 0.839008
Target:  5'- gCUCGGGCGCUgcGACCCGGcCGUGGc -3'
miRNA:   3'- gGGGUCUGUGGa-UUGGGCUcGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 15858 0.67 0.797146
Target:  5'- cCCCCAGGCcgcggugggGCC--GCgCGAGCcGCGGc -3'
miRNA:   3'- -GGGGUCUG---------UGGauUGgGCUCG-CGCCc -5'
23586 5' -58.5 NC_005261.1 + 133628 0.67 0.751768
Target:  5'- -aCC-GACGCCgaggggAGCCCuGGCGcCGGGg -3'
miRNA:   3'- ggGGuCUGUGGa-----UUGGGcUCGC-GCCC- -5'
23586 5' -58.5 NC_005261.1 + 73513 0.67 0.751768
Target:  5'- aCCUGGuGCACaaccGGCCCGuGCGCGGcGg -3'
miRNA:   3'- gGGGUC-UGUGga--UUGGGCuCGCGCC-C- -5'
23586 5' -58.5 NC_005261.1 + 47836 0.67 0.751768
Target:  5'- gCgCCGGGCGCC-AGCCCc-GCcgGCGGGg -3'
miRNA:   3'- -GgGGUCUGUGGaUUGGGcuCG--CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 15914 0.67 0.750831
Target:  5'- gCCaCCuGAcCGCC-GGCCCGGGCgucgccugcggcaGCGGGg -3'
miRNA:   3'- -GG-GGuCU-GUGGaUUGGGCUCG-------------CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 97058 0.67 0.797146
Target:  5'- gCCCG---GCCUgGACCCGGGcCGCGuGGa -3'
miRNA:   3'- gGGGUcugUGGA-UUGGGCUC-GCGC-CC- -5'
23586 5' -58.5 NC_005261.1 + 114731 0.67 0.797146
Target:  5'- cUCCCAGggcccGCGCCU-GCCC-AG-GCGGGc -3'
miRNA:   3'- -GGGGUC-----UGUGGAuUGGGcUCgCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 13776 0.67 0.797146
Target:  5'- gCCCCugaGGGCACCcGGCCCcggcuGGUGUGGcGg -3'
miRNA:   3'- -GGGG---UCUGUGGaUUGGGc----UCGCGCC-C- -5'
23586 5' -58.5 NC_005261.1 + 27990 0.67 0.797146
Target:  5'- cCCCCGGGCGCCgcgccGCCCa--CGCuGGa -3'
miRNA:   3'- -GGGGUCUGUGGau---UGGGcucGCGcCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.