miRNA display CGI


Results 101 - 120 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 5' -58.5 NC_005261.1 + 50089 0.67 0.78832
Target:  5'- gCCgGGGCGCC---CCCGcgcGGCGCGaGGa -3'
miRNA:   3'- gGGgUCUGUGGauuGGGC---UCGCGC-CC- -5'
23586 5' -58.5 NC_005261.1 + 132393 0.67 0.779361
Target:  5'- cUCUCGGcCGCCgUAACCCG-GCGCGc- -3'
miRNA:   3'- -GGGGUCuGUGG-AUUGGGCuCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 57012 0.67 0.779361
Target:  5'- cCCUCGGGCGCCacggUggUCCGGcucgcgcccGCGCGGc -3'
miRNA:   3'- -GGGGUCUGUGG----AuuGGGCU---------CGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 49634 0.67 0.779361
Target:  5'- aCCguGGCGCCgccGGgCCGGGCcucggcggcgaaGCGGGa -3'
miRNA:   3'- gGGguCUGUGGa--UUgGGCUCG------------CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 35374 0.67 0.779361
Target:  5'- uUCCUGGACGCgcugCUGGCCCagcacguGGCGCGGc -3'
miRNA:   3'- -GGGGUCUGUG----GAUUGGGc------UCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 29883 0.67 0.779361
Target:  5'- gCCUGcGACGgCggcGGCCCuGGCGCGGGu -3'
miRNA:   3'- gGGGU-CUGUgGa--UUGGGcUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 61996 0.67 0.770277
Target:  5'- gCUCAGGCGCCgcguCUCGucaAGCGCGcGGc -3'
miRNA:   3'- gGGGUCUGUGGauu-GGGC---UCGCGC-CC- -5'
23586 5' -58.5 NC_005261.1 + 65351 0.67 0.770277
Target:  5'- aCCCCGGcggcggggcGgACCUGcccgcgguccacGCCUGGGCGCuGGa -3'
miRNA:   3'- -GGGGUC---------UgUGGAU------------UGGGCUCGCGcCC- -5'
23586 5' -58.5 NC_005261.1 + 47836 0.67 0.751768
Target:  5'- gCgCCGGGCGCC-AGCCCc-GCcgGCGGGg -3'
miRNA:   3'- -GgGGUCUGUGGaUUGGGcuCG--CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 15914 0.67 0.750831
Target:  5'- gCCaCCuGAcCGCC-GGCCCGGGCgucgccugcggcaGCGGGg -3'
miRNA:   3'- -GG-GGuCU-GUGGaUUGGGCUCG-------------CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 73513 0.67 0.751768
Target:  5'- aCCUGGuGCACaaccGGCCCGuGCGCGGcGg -3'
miRNA:   3'- gGGGUC-UGUGga--UUGGGCuCGCGCC-C- -5'
23586 5' -58.5 NC_005261.1 + 33225 0.67 0.761076
Target:  5'- gCCCuGGCGCCccGACCgccgcccgcgcUGGGCGcCGGGg -3'
miRNA:   3'- gGGGuCUGUGGa-UUGG-----------GCUCGC-GCCC- -5'
23586 5' -58.5 NC_005261.1 + 133628 0.67 0.751768
Target:  5'- -aCC-GACGCCgaggggAGCCCuGGCGcCGGGg -3'
miRNA:   3'- ggGGuCUGUGGa-----UUGGGcUCGC-GCCC- -5'
23586 5' -58.5 NC_005261.1 + 19304 0.67 0.770277
Target:  5'- gCCgCGcGGCGCCgcGCCCGcGGCGCcGGa -3'
miRNA:   3'- -GGgGU-CUGUGGauUGGGC-UCGCGcCC- -5'
23586 5' -58.5 NC_005261.1 + 121929 0.67 0.770277
Target:  5'- gCCCGGcCGCCgcugGGCCCGAcgGCGCc-- -3'
miRNA:   3'- gGGGUCuGUGGa---UUGGGCU--CGCGccc -5'
23586 5' -58.5 NC_005261.1 + 100062 0.67 0.770277
Target:  5'- cCUCCAGGCAgCcGugCUGcGGCcGCGGGg -3'
miRNA:   3'- -GGGGUCUGUgGaUugGGC-UCG-CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 74529 0.67 0.797146
Target:  5'- aCCUGGGCaacacGCCgcagAACCUGuauaugacGCGCGGGg -3'
miRNA:   3'- gGGGUCUG-----UGGa---UUGGGCu-------CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 27990 0.67 0.797146
Target:  5'- cCCCCGGGCGCCgcgccGCCCa--CGCuGGa -3'
miRNA:   3'- -GGGGUCUGUGGau---UGGGcucGCGcCC- -5'
23586 5' -58.5 NC_005261.1 + 15858 0.67 0.797146
Target:  5'- cCCCCAGGCcgcggugggGCC--GCgCGAGCcGCGGc -3'
miRNA:   3'- -GGGGUCUG---------UGGauUGgGCUCG-CGCCc -5'
23586 5' -58.5 NC_005261.1 + 13776 0.67 0.797146
Target:  5'- gCCCCugaGGGCACCcGGCCCcggcuGGUGUGGcGg -3'
miRNA:   3'- -GGGG---UCUGUGGaUUGGGc----UCGCGCC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.