miRNA display CGI


Results 61 - 80 of 499 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 5' -58.5 NC_005261.1 + 60131 0.74 0.400679
Target:  5'- gCCgGGGCcgggGCCUGGgCCG-GCGCGGGg -3'
miRNA:   3'- gGGgUCUG----UGGAUUgGGCuCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 107059 0.74 0.409036
Target:  5'- gCCgCCAG-CGCCgcgGCgCUGGGCGCGGGc -3'
miRNA:   3'- -GG-GGUCuGUGGau-UG-GGCUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 2542 0.74 0.409036
Target:  5'- gCCgCCAG-CGCCgcgGCgCUGGGCGCGGGc -3'
miRNA:   3'- -GG-GGUCuGUGGau-UG-GGCUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 93929 0.73 0.417502
Target:  5'- gCCCgCGGGCAgcggcCCUGGCCCGccgcuGGCgGCGGGc -3'
miRNA:   3'- -GGG-GUCUGU-----GGAUUGGGC-----UCG-CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 77219 0.73 0.425212
Target:  5'- gCCCCAcgacggcGAUGCCggAGCCgGAgGCGCGGGc -3'
miRNA:   3'- -GGGGU-------CUGUGGa-UUGGgCU-CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 106933 0.73 0.426073
Target:  5'- gCCgCCAGcgacacgcGCACCUcGGCCCGGGCGCGc- -3'
miRNA:   3'- -GG-GGUC--------UGUGGA-UUGGGCUCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 50207 0.73 0.432135
Target:  5'- cCCCCAGGCACCgccgGccgcuuuaacggGCCCGccgggggaggagccGGCGCGaGGu -3'
miRNA:   3'- -GGGGUCUGUGGa---U------------UGGGC--------------UCGCGC-CC- -5'
23586 5' -58.5 NC_005261.1 + 31275 0.73 0.433005
Target:  5'- aCCCCgAGGCGCUggccgagaucgcGGCCCGccgccGCGCGGGg -3'
miRNA:   3'- -GGGG-UCUGUGGa-----------UUGGGCu----CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 135792 0.73 0.433005
Target:  5'- aCCCCgAGGCGCUggccgagaucgcGGCCCGccgccGCGCGGGg -3'
miRNA:   3'- -GGGG-UCUGUGGa-----------UUGGGCu----CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 53915 0.73 0.433876
Target:  5'- gCCCCGGACgcgACCUAcgccuucggcgccGCCgGGGC-CGGGg -3'
miRNA:   3'- -GGGGUCUG---UGGAU-------------UGGgCUCGcGCCC- -5'
23586 5' -58.5 NC_005261.1 + 35114 0.73 0.434749
Target:  5'- aCCCGGGCGCgCUGGCgCCGGGgGCGcuGGc -3'
miRNA:   3'- gGGGUCUGUG-GAUUG-GGCUCgCGC--CC- -5'
23586 5' -58.5 NC_005261.1 + 118543 0.73 0.440882
Target:  5'- aCCCCugcggcgcgcgcgaGGACGCCguGCCCGcGCGCGcGGc -3'
miRNA:   3'- -GGGG--------------UCUGUGGauUGGGCuCGCGC-CC- -5'
23586 5' -58.5 NC_005261.1 + 122305 0.73 0.443525
Target:  5'- gCCCGGGCcCCggcCCCGGccccggcuGCGCGGGg -3'
miRNA:   3'- gGGGUCUGuGGauuGGGCU--------CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 9979 0.73 0.443525
Target:  5'- cCCCCGGACGC---GCCUcGGCGCGGc -3'
miRNA:   3'- -GGGGUCUGUGgauUGGGcUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 74534 0.73 0.443525
Target:  5'- gCUUGGGCGCCUAgaguuugccuGCCUGGGCGUGGa -3'
miRNA:   3'- gGGGUCUGUGGAU----------UGGGCUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 34038 0.73 0.450618
Target:  5'- gCCUGGACGCCgucccgcccgacGACCCGcGCGCGGc -3'
miRNA:   3'- gGGGUCUGUGGa-----------UUGGGCuCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 50907 0.73 0.4524
Target:  5'- aCCUugaucGGCGCCgccuCgCCGGGCGCGGGg -3'
miRNA:   3'- gGGGu----CUGUGGauu-G-GGCUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 68263 0.72 0.461372
Target:  5'- gCCUGGcGCGCCUGcGCCCGcGCGgCGGGg -3'
miRNA:   3'- gGGGUC-UGUGGAU-UGGGCuCGC-GCCC- -5'
23586 5' -58.5 NC_005261.1 + 2973 0.72 0.464987
Target:  5'- gCCCGGGCugaggcuggggcucgGCCUGgcgGCCCG-GCGcCGGGg -3'
miRNA:   3'- gGGGUCUG---------------UGGAU---UGGGCuCGC-GCCC- -5'
23586 5' -58.5 NC_005261.1 + 35146 0.72 0.467707
Target:  5'- cCCCCGcGGCGCaagcacgcgcaugcgGACCCGAGCGCagagaagaGGGg -3'
miRNA:   3'- -GGGGU-CUGUGga-------------UUGGGCUCGCG--------CCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.