miRNA display CGI


Results 81 - 100 of 499 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 5' -58.5 NC_005261.1 + 18689 0.72 0.469526
Target:  5'- gCCCCAGGCugUUGcggcgcacgucgGCgaagcagagaucgUCGGGCGCGGGg -3'
miRNA:   3'- -GGGGUCUGugGAU------------UG-------------GGCUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 46791 0.72 0.470436
Target:  5'- gCCCCGGGCGCCcguCgCGGcGCGCGcGGa -3'
miRNA:   3'- -GGGGUCUGUGGauuGgGCU-CGCGC-CC- -5'
23586 5' -58.5 NC_005261.1 + 134587 0.72 0.478671
Target:  5'- gCUCCAGACGCgCUAgcggcgcACCCGgAGCGCGu- -3'
miRNA:   3'- -GGGGUCUGUG-GAU-------UGGGC-UCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 30069 0.72 0.478671
Target:  5'- gCUCCAGACGCgCUAgcggcgcACCCGgAGCGCGu- -3'
miRNA:   3'- -GGGGUCUGUG-GAU-------UGGGC-UCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 33069 0.72 0.479591
Target:  5'- gCCCCguGGACGCCgccCUCGAGcCGCGaGGa -3'
miRNA:   3'- -GGGG--UCUGUGGauuGGGCUC-GCGC-CC- -5'
23586 5' -58.5 NC_005261.1 + 53545 0.72 0.49255
Target:  5'- gCCCGcGCGCCggcuucgugugcgcGGCCgCGGGCGCGGGc -3'
miRNA:   3'- gGGGUcUGUGGa-------------UUGG-GCUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 33677 0.72 0.498154
Target:  5'- cCCCCAaaaaACACCcc-CCCGGggucGCGCGGGg -3'
miRNA:   3'- -GGGGUc---UGUGGauuGGGCU----CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 44746 0.72 0.498154
Target:  5'- gCCCCGaGCugCgcgcGACCCGGGagcggaGCGGGa -3'
miRNA:   3'- -GGGGUcUGugGa---UUGGGCUCg-----CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 46368 0.72 0.498154
Target:  5'- --aCGGACGCCgagGugCCggcgguGAGCGCGGGg -3'
miRNA:   3'- gggGUCUGUGGa--UugGG------CUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 12697 0.72 0.498154
Target:  5'- -aCCAGAC-CUUGaaGCCCGAGCGgcuCGGGc -3'
miRNA:   3'- ggGGUCUGuGGAU--UGGGCUCGC---GCCC- -5'
23586 5' -58.5 NC_005261.1 + 511 0.72 0.498154
Target:  5'- cCCCCAaaaaACACCcc-CCCGGggucGCGCGGGg -3'
miRNA:   3'- -GGGGUc---UGUGGauuGGGCU----CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 138194 0.72 0.498154
Target:  5'- cCCCCAaaaaACACCcc-CCCGGggucGCGCGGGg -3'
miRNA:   3'- -GGGGUc---UGUGGauuGGGCU----CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 102779 0.72 0.498154
Target:  5'- gCCCgAGGCcucGCCccGGCCgCGAGCGCGGc -3'
miRNA:   3'- -GGGgUCUG---UGGa-UUGG-GCUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 75106 0.72 0.499091
Target:  5'- cCCCCcGGCACCggggagcucguggagGACCCGuGCGCGc- -3'
miRNA:   3'- -GGGGuCUGUGGa--------------UUGGGCuCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 2816 0.72 0.507556
Target:  5'- -gCCGGGCgGCCccAGCCCGAGCuCGGGc -3'
miRNA:   3'- ggGGUCUG-UGGa-UUGGGCUCGcGCCC- -5'
23586 5' -58.5 NC_005261.1 + 45682 0.72 0.507556
Target:  5'- gCCCCGGGCugCUGaacggGCCCcucgccGCGCaGGGg -3'
miRNA:   3'- -GGGGUCUGugGAU-----UGGGcu----CGCG-CCC- -5'
23586 5' -58.5 NC_005261.1 + 105296 0.72 0.507556
Target:  5'- gCCCGGGCGCg-----CGAGCGCGGGg -3'
miRNA:   3'- gGGGUCUGUGgauuggGCUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 89097 0.72 0.507556
Target:  5'- gCCCGGGCGCgCUGGCgCGcGCGUGGc -3'
miRNA:   3'- gGGGUCUGUG-GAUUGgGCuCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 107333 0.72 0.507556
Target:  5'- -gCCGGGCgGCCccAGCCCGAGCuCGGGc -3'
miRNA:   3'- ggGGUCUG-UGGa-UUGGGCUCGcGCCC- -5'
23586 5' -58.5 NC_005261.1 + 38074 0.72 0.507556
Target:  5'- uCCCUGGGCGCgCUGugcuucucgcuGgCCGAGCGgGGGc -3'
miRNA:   3'- -GGGGUCUGUG-GAU-----------UgGGCUCGCgCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.