miRNA display CGI


Results 101 - 120 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 5' -58.5 NC_005261.1 + 66784 0.71 0.514182
Target:  5'- gCUCCGGgaggcggcggcugcGCGCCgcgGGCCCGGGC-CGGGc -3'
miRNA:   3'- -GGGGUC--------------UGUGGa--UUGGGCUCGcGCCC- -5'
23586 5' -58.5 NC_005261.1 + 98664 0.71 0.516081
Target:  5'- cCCCCAGGCgagggcgggcuccGCCggGGCCgGAgGCGCGGc -3'
miRNA:   3'- -GGGGUCUG-------------UGGa-UUGGgCU-CGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 8417 0.71 0.517032
Target:  5'- aUCCGGGCGCagggcgcgGGCgCGAGCGCGGa -3'
miRNA:   3'- gGGGUCUGUGga------UUGgGCUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 59126 0.71 0.520843
Target:  5'- uCCCCGGcCACC-GAcucaggccggcgcgcCCCGGGCGCGcGGc -3'
miRNA:   3'- -GGGGUCuGUGGaUU---------------GGGCUCGCGC-CC- -5'
23586 5' -58.5 NC_005261.1 + 121748 0.71 0.526579
Target:  5'- gCUCUgaguGGAguCCgAGCCCGAGCGCGGu -3'
miRNA:   3'- -GGGG----UCUguGGaUUGGGCUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 50499 0.71 0.526579
Target:  5'- cCCCCAG-CGCCUcGCCCagccAGCGCagcaGGGc -3'
miRNA:   3'- -GGGGUCuGUGGAuUGGGc---UCGCG----CCC- -5'
23586 5' -58.5 NC_005261.1 + 41533 0.71 0.526579
Target:  5'- cCCCCAGcccCGgCUGGCCCGuggcGGUGCGGu -3'
miRNA:   3'- -GGGGUCu--GUgGAUUGGGC----UCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 70550 0.71 0.526579
Target:  5'- gCCCCacccgccgcaGGGCGCCgcgaagAGCUCGGGCGCGa- -3'
miRNA:   3'- -GGGG----------UCUGUGGa-----UUGGGCUCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 39729 0.71 0.526579
Target:  5'- gCCCGuacgccGGCACCUuacccGCCCGAGCccGCGGa -3'
miRNA:   3'- gGGGU------CUGUGGAu----UGGGCUCG--CGCCc -5'
23586 5' -58.5 NC_005261.1 + 81217 0.71 0.526579
Target:  5'- -gCCGGAcCACCguggcGCCCGAGgGCGGcGg -3'
miRNA:   3'- ggGGUCU-GUGGau---UGGGCUCgCGCC-C- -5'
23586 5' -58.5 NC_005261.1 + 131802 0.71 0.530416
Target:  5'- cCCCCGGACcgcccucgcgagcagGCCgGGCCaaCGcGCGCGGGu -3'
miRNA:   3'- -GGGGUCUG---------------UGGaUUGG--GCuCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 27285 0.71 0.530416
Target:  5'- cCCCCGGACcgcccucgcgagcagGCCgGGCCaaCGcGCGCGGGu -3'
miRNA:   3'- -GGGGUCUG---------------UGGaUUGG--GCuCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 135274 0.71 0.53619
Target:  5'- gCCCGGGC-CCUAGUCCGGGC-CGGa -3'
miRNA:   3'- gGGGUCUGuGGAUUGGGCUCGcGCCc -5'
23586 5' -58.5 NC_005261.1 + 99303 0.71 0.53619
Target:  5'- gCCCGGcCGCC-GGCuuGGcGCGCGGGc -3'
miRNA:   3'- gGGGUCuGUGGaUUGggCU-CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 74107 0.71 0.53619
Target:  5'- cCCCCGGGC-CCgGACCCGgugguccuGGCGCcGGu -3'
miRNA:   3'- -GGGGUCUGuGGaUUGGGC--------UCGCGcCC- -5'
23586 5' -58.5 NC_005261.1 + 109472 0.71 0.53619
Target:  5'- gCCCAGGCGCC---CCCGGcCGCGGc -3'
miRNA:   3'- gGGGUCUGUGGauuGGGCUcGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 4192 0.71 0.53619
Target:  5'- gCCguGGCcgGCCaUGGCCgCGAGCGCGGcGg -3'
miRNA:   3'- gGGguCUG--UGG-AUUGG-GCUCGCGCC-C- -5'
23586 5' -58.5 NC_005261.1 + 92802 0.71 0.53619
Target:  5'- gUCCGGuCGCCgggcGCgCGGGCGUGGGa -3'
miRNA:   3'- gGGGUCuGUGGau--UGgGCUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 63546 0.71 0.53619
Target:  5'- gCCCGcGCGCCguGCCCGcuGGCGCGGc -3'
miRNA:   3'- gGGGUcUGUGGauUGGGC--UCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 44453 0.71 0.53619
Target:  5'- gUCCCggGGGCACCUGcugcgacgccGCgCGcGCGCGGGc -3'
miRNA:   3'- -GGGG--UCUGUGGAU----------UGgGCuCGCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.