Results 61 - 80 of 499 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23586 | 5' | -58.5 | NC_005261.1 | + | 75799 | 0.66 | 0.822748 |
Target: 5'- gCCCGGcgaccggcuCGCgCUGGCCucggCGGGCGCGGa -3' miRNA: 3'- gGGGUCu--------GUG-GAUUGG----GCUCGCGCCc -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 77964 | 0.66 | 0.821917 |
Target: 5'- aCCCCGGGCGCCUcuucacggccgccGcuCCCGc-CGCGGcGg -3' miRNA: 3'- -GGGGUCUGUGGA-------------Uu-GGGCucGCGCC-C- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 79030 | 0.66 | 0.820251 |
Target: 5'- gCCCgGGGCGCCcgcGCCCuuggcgucguccuuGAGCGCGc- -3' miRNA: 3'- -GGGgUCUGUGGau-UGGG--------------CUCGCGCcc -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 39537 | 0.66 | 0.817739 |
Target: 5'- gCCCCAGcuccggccGCGCCUccGGCCCcGGCGgagcccgcccucgccUGGGg -3' miRNA: 3'- -GGGGUC--------UGUGGA--UUGGGcUCGC---------------GCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 17627 | 0.66 | 0.814368 |
Target: 5'- gCCCCAcGGCGCCgAGgCCGcaGGCGaCGGc -3' miRNA: 3'- -GGGGU-CUGUGGaUUgGGC--UCGC-GCCc -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 47534 | 0.66 | 0.814368 |
Target: 5'- aCUC-GACGgCguuCCCGGGCGCGGc -3' miRNA: 3'- gGGGuCUGUgGauuGGGCUCGCGCCc -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 106807 | 0.66 | 0.814368 |
Target: 5'- -aCCAG-CGCCgagUGGCCCGccagcAGCGCGuGGu -3' miRNA: 3'- ggGGUCuGUGG---AUUGGGC-----UCGCGC-CC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 53798 | 0.66 | 0.814368 |
Target: 5'- gCCCGGGgGCUggucGCCggaGGGCGCGGc -3' miRNA: 3'- gGGGUCUgUGGau--UGGg--CUCGCGCCc -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 115260 | 0.66 | 0.814368 |
Target: 5'- gCUCCAGcACGCCgccgcgcgUCUGGGaCGCGGGc -3' miRNA: 3'- -GGGGUC-UGUGGauu-----GGGCUC-GCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 95328 | 0.66 | 0.814368 |
Target: 5'- gCCCCGGAgCGCCcgggucacGugCCGAGC-CGGc -3' miRNA: 3'- -GGGGUCU-GUGGa-------UugGGCUCGcGCCc -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 39394 | 0.66 | 0.814368 |
Target: 5'- gCCCuGGCGgC-GACCCGAGCcccaGCGGc -3' miRNA: 3'- gGGGuCUGUgGaUUGGGCUCG----CGCCc -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 132309 | 0.66 | 0.814368 |
Target: 5'- gCCUUAGGCGCCccauCCCc--CGCGGGg -3' miRNA: 3'- -GGGGUCUGUGGauu-GGGcucGCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 103051 | 0.66 | 0.814368 |
Target: 5'- gCCCAG-CGCCUGuCCCG-GCaCGGc -3' miRNA: 3'- gGGGUCuGUGGAUuGGGCuCGcGCCc -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 90390 | 0.66 | 0.814368 |
Target: 5'- gCCCCGccGGCgggGCUggcGCCCG-GCGCGGa -3' miRNA: 3'- -GGGGU--CUG---UGGau-UGGGCuCGCGCCc -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 123209 | 0.66 | 0.809264 |
Target: 5'- gCCCCcGGCACCcgccgacAACuccuccucccgcgcuCCGGGCGCGGc -3' miRNA: 3'- -GGGGuCUGUGGa------UUG---------------GGCUCGCGCCc -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 10396 | 0.66 | 0.805832 |
Target: 5'- gCCCCGuccGCugCUcgcGGCCgCGAGCGCGa- -3' miRNA: 3'- -GGGGUc--UGugGA---UUGG-GCUCGCGCcc -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 65164 | 0.66 | 0.805832 |
Target: 5'- cUCCUGGcgaacacguGCGCCUu-CCUaGGCGCGGGg -3' miRNA: 3'- -GGGGUC---------UGUGGAuuGGGcUCGCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 27658 | 0.66 | 0.805832 |
Target: 5'- -gCCGG-CACgUGGgCCgugGAGCGCGGGu -3' miRNA: 3'- ggGGUCuGUGgAUUgGG---CUCGCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 66077 | 0.66 | 0.805832 |
Target: 5'- aUCCCGGACACCccgGacgugcagucgcACCCGGGgCucuuCGGGg -3' miRNA: 3'- -GGGGUCUGUGGa--U------------UGGGCUC-Gc---GCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 136861 | 0.66 | 0.805832 |
Target: 5'- gCCUgGGACGCg-GACCaGGGCccGCGGGa -3' miRNA: 3'- -GGGgUCUGUGgaUUGGgCUCG--CGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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