miRNA display CGI


Results 81 - 100 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 5' -58.5 NC_005261.1 + 10396 0.66 0.805832
Target:  5'- gCCCCGuccGCugCUcgcGGCCgCGAGCGCGa- -3'
miRNA:   3'- -GGGGUc--UGugGA---UUGG-GCUCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 65164 0.66 0.805832
Target:  5'- cUCCUGGcgaacacguGCGCCUu-CCUaGGCGCGGGg -3'
miRNA:   3'- -GGGGUC---------UGUGGAuuGGGcUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 97560 0.66 0.805832
Target:  5'- gCCCGucCGCCcgggguUGGCUCGguGGCGCGGGc -3'
miRNA:   3'- gGGGUcuGUGG------AUUGGGC--UCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 127014 0.66 0.805832
Target:  5'- gCCgCAGGCGgC-GGCCCGAGCa-GGGa -3'
miRNA:   3'- -GGgGUCUGUgGaUUGGGCUCGcgCCC- -5'
23586 5' -58.5 NC_005261.1 + 124953 0.66 0.805832
Target:  5'- -gCCGG-CGCCcuggAGCCCGcacucaaaucGCGCGGGg -3'
miRNA:   3'- ggGGUCuGUGGa---UUGGGCu---------CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 96316 0.66 0.805832
Target:  5'- -aCCuGACGCCcugacUGGCCUG-GCGCGGc -3'
miRNA:   3'- ggGGuCUGUGG-----AUUGGGCuCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 96352 0.66 0.805832
Target:  5'- -aCCuGACGCCcugacUGGCCUG-GCGCGGc -3'
miRNA:   3'- ggGGuCUGUGG-----AUUGGGCuCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 32344 0.66 0.805832
Target:  5'- gCCUgGGACGCg-GACCaGGGCccGCGGGa -3'
miRNA:   3'- -GGGgUCUGUGgaUUGGgCUCG--CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 72003 0.66 0.805832
Target:  5'- gCCCCuGGC-CUUAACgCCGGGgGCGa- -3'
miRNA:   3'- -GGGGuCUGuGGAUUG-GGCUCgCGCcc -5'
23586 5' -58.5 NC_005261.1 + 30240 0.66 0.805832
Target:  5'- gCCCCGcuGGCGCgguACUCGAcGCGCGGc -3'
miRNA:   3'- -GGGGU--CUGUGgauUGGGCU-CGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 102456 0.66 0.80497
Target:  5'- gCCCgCGGGCcuCCUGucucgGCCCGAGCcgccuucGCGGc -3'
miRNA:   3'- -GGG-GUCUGu-GGAU-----UGGGCUCG-------CGCCc -5'
23586 5' -58.5 NC_005261.1 + 82729 0.67 0.797146
Target:  5'- gCCCAGugGCUgcuCCaGAGCGCGc- -3'
miRNA:   3'- gGGGUCugUGGauuGGgCUCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 57662 0.67 0.797146
Target:  5'- cCCCCgAGACugCgcgAGCgCC-AGCcgGCGGGg -3'
miRNA:   3'- -GGGG-UCUGugGa--UUG-GGcUCG--CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 132494 0.67 0.797146
Target:  5'- uCCUgGGACgcGCCcGACCgCGA-CGCGGGc -3'
miRNA:   3'- -GGGgUCUG--UGGaUUGG-GCUcGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 74529 0.67 0.797146
Target:  5'- aCCUGGGCaacacGCCgcagAACCUGuauaugacGCGCGGGg -3'
miRNA:   3'- gGGGUCUG-----UGGa---UUGGGCu-------CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 15858 0.67 0.797146
Target:  5'- cCCCCAGGCcgcggugggGCC--GCgCGAGCcGCGGc -3'
miRNA:   3'- -GGGGUCUG---------UGGauUGgGCUCG-CGCCc -5'
23586 5' -58.5 NC_005261.1 + 13776 0.67 0.797146
Target:  5'- gCCCCugaGGGCACCcGGCCCcggcuGGUGUGGcGg -3'
miRNA:   3'- -GGGG---UCUGUGGaUUGGGc----UCGCGCC-C- -5'
23586 5' -58.5 NC_005261.1 + 114731 0.67 0.797146
Target:  5'- cUCCCAGggcccGCGCCU-GCCC-AG-GCGGGc -3'
miRNA:   3'- -GGGGUC-----UGUGGAuUGGGcUCgCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 97058 0.67 0.797146
Target:  5'- gCCCG---GCCUgGACCCGGGcCGCGuGGa -3'
miRNA:   3'- gGGGUcugUGGA-UUGGGCUC-GCGC-CC- -5'
23586 5' -58.5 NC_005261.1 + 27990 0.67 0.797146
Target:  5'- cCCCCGGGCGCCgcgccGCCCa--CGCuGGa -3'
miRNA:   3'- -GGGGUCUGUGGau---UGGGcucGCGcCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.