miRNA display CGI


Results 81 - 100 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 5' -58.5 NC_005261.1 + 27285 0.71 0.530416
Target:  5'- cCCCCGGACcgcccucgcgagcagGCCgGGCCaaCGcGCGCGGGu -3'
miRNA:   3'- -GGGGUCUG---------------UGGaUUGG--GCuCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 27487 0.68 0.713621
Target:  5'- uCCCCGGgcGCACCUGGaCCGccaggucuGgGCGGGc -3'
miRNA:   3'- -GGGGUC--UGUGGAUUgGGCu-------CgCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 27658 0.66 0.805832
Target:  5'- -gCCGG-CACgUGGgCCgugGAGCGCGGGu -3'
miRNA:   3'- ggGGUCuGUGgAUUgGG---CUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 27780 0.82 0.120836
Target:  5'- gCCCAGGCACCcaaacGCCCG-GUGCGGGa -3'
miRNA:   3'- gGGGUCUGUGGau---UGGGCuCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 27876 0.67 0.779361
Target:  5'- cUCUCGGcCGCCgUAACCCG-GCGCGc- -3'
miRNA:   3'- -GGGGUCuGUGG-AUUGGGCuCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 27990 0.67 0.797146
Target:  5'- cCCCCGGGCGCCgcgccGCCCa--CGCuGGa -3'
miRNA:   3'- -GGGGUCUGUGGau---UGGGcucGCGcCC- -5'
23586 5' -58.5 NC_005261.1 + 28225 0.66 0.839008
Target:  5'- gCCCCAGcUACCc--CCCGGcGCGCGcGa -3'
miRNA:   3'- -GGGGUCuGUGGauuGGGCU-CGCGC-Cc -5'
23586 5' -58.5 NC_005261.1 + 28749 0.68 0.69412
Target:  5'- gCCCCGGcCAUUUGcGCUCGGGCGCGc- -3'
miRNA:   3'- -GGGGUCuGUGGAU-UGGGCUCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 28766 0.75 0.323336
Target:  5'- gCCggGGGCGCCUGGgCCGcGGCGCGGGc -3'
miRNA:   3'- -GGggUCUGUGGAUUgGGC-UCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 28960 0.76 0.316243
Target:  5'- -gCCAGGC-CCaAGCCCGAGC-CGGGg -3'
miRNA:   3'- ggGGUCUGuGGaUUGGGCUCGcGCCC- -5'
23586 5' -58.5 NC_005261.1 + 29110 0.67 0.751768
Target:  5'- -aCC-GACGCCgaggggAGCCCuGGCGcCGGGg -3'
miRNA:   3'- ggGGuCUGUGGa-----UUGGGcUCGC-GCCC- -5'
23586 5' -58.5 NC_005261.1 + 29183 0.67 0.779361
Target:  5'- gCCCGG-CGCCcucGCCgCGGcgcccGCGCGGGc -3'
miRNA:   3'- gGGGUCuGUGGau-UGG-GCU-----CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 29294 0.7 0.614795
Target:  5'- cCUCCGgcGAgGCCUGGCCCGgcAGCGCGc- -3'
miRNA:   3'- -GGGGU--CUgUGGAUUGGGC--UCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 29628 0.7 0.575188
Target:  5'- gCCCgAGGCGCUgguGCCCGuGgGCGaGGc -3'
miRNA:   3'- -GGGgUCUGUGGau-UGGGCuCgCGC-CC- -5'
23586 5' -58.5 NC_005261.1 + 29795 0.76 0.302411
Target:  5'- aCCCGGAgGCCggcGCCgGcGGCGCGGGc -3'
miRNA:   3'- gGGGUCUgUGGau-UGGgC-UCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 29883 0.67 0.779361
Target:  5'- gCCUGcGACGgCggcGGCCCuGGCGCGGGu -3'
miRNA:   3'- gGGGU-CUGUgGa--UUGGGcUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 29886 0.66 0.822748
Target:  5'- gCCgCCAG-CGCCcgGGCCCGcggcAGCGCGcGa -3'
miRNA:   3'- -GG-GGUCuGUGGa-UUGGGC----UCGCGC-Cc -5'
23586 5' -58.5 NC_005261.1 + 30069 0.72 0.478671
Target:  5'- gCUCCAGACGCgCUAgcggcgcACCCGgAGCGCGu- -3'
miRNA:   3'- -GGGGUCUGUG-GAU-------UGGGC-UCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 30104 0.7 0.614795
Target:  5'- gCUCCGGGCAgCUGAgCUGcuuGGCGCGGc -3'
miRNA:   3'- -GGGGUCUGUgGAUUgGGC---UCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 30240 0.66 0.805832
Target:  5'- gCCCCGcuGGCGCgguACUCGAcGCGCGGc -3'
miRNA:   3'- -GGGGU--CUGUGgauUGGGCU-CGCGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.