miRNA display CGI


Results 101 - 120 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 5' -58.5 NC_005261.1 + 30288 0.66 0.830963
Target:  5'- gCCUGGACG-CUGGCCCGcGCGCu-- -3'
miRNA:   3'- gGGGUCUGUgGAUUGGGCuCGCGccc -5'
23586 5' -58.5 NC_005261.1 + 30342 0.69 0.664521
Target:  5'- gCCgCGGACaagcggGCCgcgGGCgCGAGCGCGcGGg -3'
miRNA:   3'- -GGgGUCUG------UGGa--UUGgGCUCGCGC-CC- -5'
23586 5' -58.5 NC_005261.1 + 30369 0.7 0.585048
Target:  5'- -gCCGGcGCGCCgGGCgCCGcGGCGCGGGu -3'
miRNA:   3'- ggGGUC-UGUGGaUUG-GGC-UCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 30757 0.71 0.53619
Target:  5'- gCCCGGGC-CCUAGUCCGGGC-CGGa -3'
miRNA:   3'- gGGGUCUGuGGAUUGGGCUCGcGCCc -5'
23586 5' -58.5 NC_005261.1 + 30879 0.69 0.634699
Target:  5'- gCCgCCGG-C-CCUGccGCCCGAGCuCGGGc -3'
miRNA:   3'- -GG-GGUCuGuGGAU--UGGGCUCGcGCCC- -5'
23586 5' -58.5 NC_005261.1 + 30924 0.7 0.614795
Target:  5'- cUCCCGGcCGCCggcgcAGCCCcucGGGgGCGGGc -3'
miRNA:   3'- -GGGGUCuGUGGa----UUGGG---CUCgCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 31275 0.73 0.433005
Target:  5'- aCCCCgAGGCGCUggccgagaucgcGGCCCGccgccGCGCGGGg -3'
miRNA:   3'- -GGGG-UCUGUGGa-----------UUGGGCu----CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 31370 0.68 0.742359
Target:  5'- gCCgCGGACGCCc-GCCCcccaGGCgGCGGGc -3'
miRNA:   3'- -GGgGUCUGUGGauUGGGc---UCG-CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 31450 0.66 0.826054
Target:  5'- gCCCGGcgaggacgaGCGCCggcGGCCUGAGUggccgccggugcgcgGCGGGc -3'
miRNA:   3'- gGGGUC---------UGUGGa--UUGGGCUCG---------------CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 31667 0.69 0.654595
Target:  5'- gCCCCGGggccggcgcGCGCC-GGCCCGGaCGCGGc -3'
miRNA:   3'- -GGGGUC---------UGUGGaUUGGGCUcGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 32344 0.66 0.805832
Target:  5'- gCCUgGGACGCg-GACCaGGGCccGCGGGa -3'
miRNA:   3'- -GGGgUCUGUGgaUUGGgCUCG--CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 32464 0.76 0.316243
Target:  5'- cCCCCGGGCACg-GACUCGGGCuuccCGGGg -3'
miRNA:   3'- -GGGGUCUGUGgaUUGGGCUCGc---GCCC- -5'
23586 5' -58.5 NC_005261.1 + 32535 0.7 0.604858
Target:  5'- gCCCCGG-C-CCcGGCCgCG-GCGCGGGc -3'
miRNA:   3'- -GGGGUCuGuGGaUUGG-GCuCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 32999 0.66 0.839008
Target:  5'- gCCgCAGAUcacggccgcgGCCgcgGCCCGcGCgGCGGGa -3'
miRNA:   3'- -GGgGUCUG----------UGGau-UGGGCuCG-CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 33069 0.72 0.479591
Target:  5'- gCCCCguGGACGCCgccCUCGAGcCGCGaGGa -3'
miRNA:   3'- -GGGG--UCUGUGGauuGGGCUC-GCGC-CC- -5'
23586 5' -58.5 NC_005261.1 + 33225 0.67 0.761076
Target:  5'- gCCCuGGCGCCccGACCgccgcccgcgcUGGGCGcCGGGg -3'
miRNA:   3'- gGGGuCUGUGGa-UUGG-----------GCUCGC-GCCC- -5'
23586 5' -58.5 NC_005261.1 + 33413 0.68 0.740466
Target:  5'- gCCCCGcGACGCCgcugcggagcggGACCCGcuggAGCacgcgaucGCGGGc -3'
miRNA:   3'- -GGGGU-CUGUGGa-----------UUGGGC----UCG--------CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 33463 0.68 0.69412
Target:  5'- gCCgCAGcCGCCgccgcagccgGGCCCGcuCGCGGGg -3'
miRNA:   3'- -GGgGUCuGUGGa---------UUGGGCucGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 33558 0.67 0.775742
Target:  5'- gCCCAGGCGCUgccgcagcacacGCCCGccAGCGCGu- -3'
miRNA:   3'- gGGGUCUGUGGau----------UGGGC--UCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 33585 0.7 0.611812
Target:  5'- gCCCCGcgagcaccaggggcGGCGCC-GGCgCGGGCGgCGGGg -3'
miRNA:   3'- -GGGGU--------------CUGUGGaUUGgGCUCGC-GCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.