Results 121 - 140 of 499 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23586 | 5' | -58.5 | NC_005261.1 | + | 33677 | 0.72 | 0.498154 |
Target: 5'- cCCCCAaaaaACACCcc-CCCGGggucGCGCGGGg -3' miRNA: 3'- -GGGGUc---UGUGGauuGGGCU----CGCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 33739 | 0.74 | 0.392431 |
Target: 5'- gCCCCucgcgcGGCGCCggggccgGGCCCGcuCGCGGGg -3' miRNA: 3'- -GGGGu-----CUGUGGa------UUGGGCucGCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 33777 | 0.67 | 0.779361 |
Target: 5'- gCCCgCGGcgaGCGCUgGGCCCc-GCGCGGGc -3' miRNA: 3'- -GGG-GUC---UGUGGaUUGGGcuCGCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 34038 | 0.73 | 0.450618 |
Target: 5'- gCCUGGACGCCgucccgcccgacGACCCGcGCGCGGc -3' miRNA: 3'- gGGGUCUGUGGa-----------UUGGGCuCGCGCCc -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 34310 | 0.76 | 0.288394 |
Target: 5'- --gCAGACGCCgcGCCCGAccuggcgGCGCGGGu -3' miRNA: 3'- gggGUCUGUGGauUGGGCU-------CGCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 34765 | 0.69 | 0.684292 |
Target: 5'- -gCUGGACGCcCUGGCgaCGGGCGCGGcGg -3' miRNA: 3'- ggGGUCUGUG-GAUUGg-GCUCGCGCC-C- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 35114 | 0.73 | 0.434749 |
Target: 5'- aCCCGGGCGCgCUGGCgCCGGGgGCGcuGGc -3' miRNA: 3'- gGGGUCUGUG-GAUUG-GGCUCgCGC--CC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 35146 | 0.72 | 0.467707 |
Target: 5'- cCCCCGcGGCGCaagcacgcgcaugcgGACCCGAGCGCagagaagaGGGg -3' miRNA: 3'- -GGGGU-CUGUGga-------------UUGGGCUCGCG--------CCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 35329 | 0.68 | 0.69412 |
Target: 5'- ---gAGGCGCUgcgGGCCagGGGCGCGGGg -3' miRNA: 3'- ggggUCUGUGGa--UUGGg-CUCGCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 35374 | 0.67 | 0.779361 |
Target: 5'- uUCCUGGACGCgcugCUGGCCCagcacguGGCGCGGc -3' miRNA: 3'- -GGGGUCUGUG----GAUUGGGc------UCGCGCCc -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 35598 | 0.68 | 0.713621 |
Target: 5'- aCCCCAG-CGCCcGGCCCcgcCGCGGc -3' miRNA: 3'- -GGGGUCuGUGGaUUGGGcucGCGCCc -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 35776 | 0.67 | 0.751768 |
Target: 5'- gCCgAGACAggaGGCCCGcgggcgccauGGCGCGGGa -3' miRNA: 3'- gGGgUCUGUggaUUGGGC----------UCGCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 35937 | 0.71 | 0.55559 |
Target: 5'- gCCCAGcggGCGCCcaGGCCCGAGCcCGGc -3' miRNA: 3'- gGGGUC---UGUGGa-UUGGGCUCGcGCCc -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 36386 | 0.69 | 0.66353 |
Target: 5'- gCCCCAGuCugCcGGCCCuGGCccacauaGCGGGa -3' miRNA: 3'- -GGGGUCuGugGaUUGGGcUCG-------CGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 36622 | 0.71 | 0.565367 |
Target: 5'- gCCCCGGcgcacaaacgGCGCgaAGCCgGcGCGCGGGc -3' miRNA: 3'- -GGGGUC----------UGUGgaUUGGgCuCGCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 37002 | 0.68 | 0.69412 |
Target: 5'- gCCCgCGGGCugCgcggGGCCaguuugCGGGgGCGGGa -3' miRNA: 3'- -GGG-GUCUGugGa---UUGG------GCUCgCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 37575 | 0.68 | 0.703899 |
Target: 5'- aCCCCGcGACGC---GCgCCGuugcGGCGCGGGc -3' miRNA: 3'- -GGGGU-CUGUGgauUG-GGC----UCGCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 37750 | 0.69 | 0.634699 |
Target: 5'- cCCCgCGGGCGCCgcgccGCCCaAGCGCcGGc -3' miRNA: 3'- -GGG-GUCUGUGGau---UGGGcUCGCGcCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 37866 | 0.7 | 0.598905 |
Target: 5'- uCCCC-GACGCCUGgcggcgcgugcuggaGCCCGAGC-UGGc -3' miRNA: 3'- -GGGGuCUGUGGAU---------------UGGGCUCGcGCCc -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 38074 | 0.72 | 0.507556 |
Target: 5'- uCCCUGGGCGCgCUGugcuucucgcuGgCCGAGCGgGGGc -3' miRNA: 3'- -GGGGUCUGUG-GAU-----------UgGGCUCGCgCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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