miRNA display CGI


Results 61 - 80 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 5' -58.5 NC_005261.1 + 124781 0.7 0.583073
Target:  5'- aCCCCgAGGCGCCggccugccugcACCCGGucgacGCGCGGu -3'
miRNA:   3'- -GGGG-UCUGUGGau---------UGGGCU-----CGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 123972 0.67 0.793632
Target:  5'- gCCCCGaagccGACACCggggcaaaggcCCCGgccGGCGCGGu -3'
miRNA:   3'- -GGGGU-----CUGUGGauu--------GGGC---UCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 123475 0.69 0.684292
Target:  5'- cUCCCAGAacucCACCaggGACaCCGGGCGCa-- -3'
miRNA:   3'- -GGGGUCU----GUGGa--UUG-GGCUCGCGccc -5'
23586 5' -58.5 NC_005261.1 + 123244 0.7 0.624744
Target:  5'- gCCCAGGCGCggGccccgcccaucGCCCGugacgaGGUGCGGGu -3'
miRNA:   3'- gGGGUCUGUGgaU-----------UGGGC------UCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 123209 0.66 0.809264
Target:  5'- gCCCCcGGCACCcgccgacAACuccuccucccgcgcuCCGGGCGCGGc -3'
miRNA:   3'- -GGGGuCUGUGGa------UUG---------------GGCUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 122305 0.73 0.443525
Target:  5'- gCCCGGGCcCCggcCCCGGccccggcuGCGCGGGg -3'
miRNA:   3'- gGGGUCUGuGGauuGGGCU--------CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 121958 0.74 0.381875
Target:  5'- cCCCCGGGCgaGCCgaaGCCCGgccccggcggccccGGCGCGGa -3'
miRNA:   3'- -GGGGUCUG--UGGau-UGGGC--------------UCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 121929 0.67 0.770277
Target:  5'- gCCCGGcCGCCgcugGGCCCGAcgGCGCc-- -3'
miRNA:   3'- gGGGUCuGUGGa---UUGGGCU--CGCGccc -5'
23586 5' -58.5 NC_005261.1 + 121748 0.71 0.526579
Target:  5'- gCUCUgaguGGAguCCgAGCCCGAGCGCGGu -3'
miRNA:   3'- -GGGG----UCUguGGaUUGGGCUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 121626 0.67 0.779361
Target:  5'- cUCCCGccgcucGGCgGCCgccGCCggCGAGCGCGGGc -3'
miRNA:   3'- -GGGGU------CUG-UGGau-UGG--GCUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 121385 0.76 0.31554
Target:  5'- gCCCCGcggcggcGGCGCCU-GCCCGAGUGCGa- -3'
miRNA:   3'- -GGGGU-------CUGUGGAuUGGGCUCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 121170 0.7 0.572238
Target:  5'- gCCCGGGCgcucggugcacgggGCCggggccgGGCCCGGGgcCGCGGGc -3'
miRNA:   3'- gGGGUCUG--------------UGGa------UUGGGCUC--GCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 120917 0.69 0.654595
Target:  5'- uCUCCAucucGAU-CCgcgAGCgCCGGGCGCGGGa -3'
miRNA:   3'- -GGGGU----CUGuGGa--UUG-GGCUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 120881 0.68 0.703899
Target:  5'- aCCUGGGCGggguGCCCGGGCgggGCGGGa -3'
miRNA:   3'- gGGGUCUGUggauUGGGCUCG---CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 120508 0.67 0.779361
Target:  5'- aCCCGG-CGCCgcuGCCCGAGUucuccGCGa- -3'
miRNA:   3'- gGGGUCuGUGGau-UGGGCUCG-----CGCcc -5'
23586 5' -58.5 NC_005261.1 + 120487 0.69 0.673434
Target:  5'- gCCCCAGAagucCGCCc-GCuCCGAGCGCcgcuccgauucccGGGc -3'
miRNA:   3'- -GGGGUCU----GUGGauUG-GGCUCGCG-------------CCC- -5'
23586 5' -58.5 NC_005261.1 + 119880 0.67 0.770277
Target:  5'- gCCgCAGccgagggcguguACACCUGGCgCCGcGaCGCGGGc -3'
miRNA:   3'- -GGgGUC------------UGUGGAUUG-GGCuC-GCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 119526 0.67 0.779361
Target:  5'- gCCCCGGuCcCCgcGgCCGAGCaaggccccgccGCGGGg -3'
miRNA:   3'- -GGGGUCuGuGGauUgGGCUCG-----------CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 118898 0.67 0.767528
Target:  5'- gCgCUGGugGCCUGcgucuggguccggcGCCgCGGGCGCGGc -3'
miRNA:   3'- -GgGGUCugUGGAU--------------UGG-GCUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 118867 0.67 0.797146
Target:  5'- gCCCGcGGC-CCUGGCCuCGGccacCGCGGGc -3'
miRNA:   3'- gGGGU-CUGuGGAUUGG-GCUc---GCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.