miRNA display CGI


Results 81 - 100 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 5' -58.5 NC_005261.1 + 118689 0.7 0.624744
Target:  5'- uCCCCAcGGCGCUggcggUGACgCGGGCcgugcuGCGGGg -3'
miRNA:   3'- -GGGGU-CUGUGG-----AUUGgGCUCG------CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 118543 0.73 0.440882
Target:  5'- aCCCCugcggcgcgcgcgaGGACGCCguGCCCGcGCGCGcGGc -3'
miRNA:   3'- -GGGG--------------UCUGUGGauUGGGCuCGCGC-CC- -5'
23586 5' -58.5 NC_005261.1 + 118368 0.68 0.742359
Target:  5'- -gCCGGGCGCUggggcgcgcGGCCCGAGgcgcuggcggcCGCGGGc -3'
miRNA:   3'- ggGGUCUGUGGa--------UUGGGCUC-----------GCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 118198 0.71 0.545862
Target:  5'- gCCCC--GCGCCU-GCCgCGcuGCGCGGGg -3'
miRNA:   3'- -GGGGucUGUGGAuUGG-GCu-CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 118195 0.69 0.683307
Target:  5'- aCCgCCGGACggaACC-GGCCCGcugaccgcggacgGGUGCGGGu -3'
miRNA:   3'- -GG-GGUCUG---UGGaUUGGGC-------------UCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 117988 0.66 0.83015
Target:  5'- gCCCauggagcgcgcggCGGAgCGgCUGGCCaggcagCGGGCGCGGGg -3'
miRNA:   3'- -GGG-------------GUCU-GUgGAUUGG------GCUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 117302 0.7 0.624744
Target:  5'- gCCCUcGA-GCCcAGCCCcGGCGCGGGc -3'
miRNA:   3'- -GGGGuCUgUGGaUUGGGcUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 116006 0.66 0.830963
Target:  5'- gCCCgAGGCgGCCUGAgCCGccgacGGCGCGc- -3'
miRNA:   3'- -GGGgUCUG-UGGAUUgGGC-----UCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 115918 0.68 0.69412
Target:  5'- gCgCCGGcCGCCgcgUCCGcGCGCGGGg -3'
miRNA:   3'- -GgGGUCuGUGGauuGGGCuCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 115581 0.69 0.631712
Target:  5'- gCCCAGGCGCCgccAGCgCGucuagggacgggacGGgGCGGGa -3'
miRNA:   3'- gGGGUCUGUGGa--UUGgGC--------------UCgCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 115513 0.68 0.713621
Target:  5'- cCCCCGcacCACCUGcuGCaCCGAGCGCa-- -3'
miRNA:   3'- -GGGGUcu-GUGGAU--UG-GGCUCGCGccc -5'
23586 5' -58.5 NC_005261.1 + 115475 0.68 0.723277
Target:  5'- cCCCCAGACgcgugggccgccGCCgccccgcGCCCGAcugGCGCuGGu -3'
miRNA:   3'- -GGGGUCUG------------UGGau-----UGGGCU---CGCGcCC- -5'
23586 5' -58.5 NC_005261.1 + 115260 0.66 0.814368
Target:  5'- gCUCCAGcACGCCgccgcgcgUCUGGGaCGCGGGc -3'
miRNA:   3'- -GGGGUC-UGUGGauu-----GGGCUC-GCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 114731 0.67 0.797146
Target:  5'- cUCCCAGggcccGCGCCU-GCCC-AG-GCGGGc -3'
miRNA:   3'- -GGGGUC-----UGUGGAuUGGGcUCgCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 114497 0.69 0.634699
Target:  5'- cUCCCGGACGC---GCCUcGGCGCGGc -3'
miRNA:   3'- -GGGGUCUGUGgauUGGGcUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 114114 0.7 0.575188
Target:  5'- cCCCCAccccCGCCUcgGGCCCGGG-GUGGGc -3'
miRNA:   3'- -GGGGUcu--GUGGA--UUGGGCUCgCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 112473 0.66 0.822748
Target:  5'- uCCCCAGGgugggcaaAUCgauCgCCGAGCGCGGc -3'
miRNA:   3'- -GGGGUCUg-------UGGauuG-GGCUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 112150 0.67 0.761076
Target:  5'- gCCCGcGACGCCgaucauGCucuucgccggCCGcGCGCGGGg -3'
miRNA:   3'- gGGGU-CUGUGGau----UG----------GGCuCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 111794 0.7 0.59494
Target:  5'- cCCCUGGACGCCUGGCUC--GCGuCGGc -3'
miRNA:   3'- -GGGGUCUGUGGAUUGGGcuCGC-GCCc -5'
23586 5' -58.5 NC_005261.1 + 110759 0.69 0.674423
Target:  5'- gCCCGGGgaggGCCU-GCCCGccCGCGGGg -3'
miRNA:   3'- gGGGUCUg---UGGAuUGGGCucGCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.