miRNA display CGI


Results 101 - 120 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 5' -58.5 NC_005261.1 + 109864 0.66 0.839008
Target:  5'- cUCCUggGGGCAgCggGGCCCGcGgGCGGGc -3'
miRNA:   3'- -GGGG--UCUGUgGa-UUGGGCuCgCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 109781 0.66 0.830963
Target:  5'- gCCCgccgggAGACGCCaUGGCCgGccgcggugcGCGCGGGu -3'
miRNA:   3'- gGGG------UCUGUGG-AUUGGgCu--------CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 109652 1.11 0.001365
Target:  5'- gCCCCAGACACCUAACCCGAGCGCGGGu -3'
miRNA:   3'- -GGGGUCUGUGGAUUGGGCUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 109623 0.66 0.822748
Target:  5'- gCCaCAGcucCGCC-AGCUCG-GCGCGGGc -3'
miRNA:   3'- gGG-GUCu--GUGGaUUGGGCuCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 109472 0.71 0.53619
Target:  5'- gCCCAGGCGCC---CCCGGcCGCGGc -3'
miRNA:   3'- gGGGUCUGUGGauuGGGCUcGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 109463 0.7 0.614795
Target:  5'- cCCCCGcuucGCGCgUGcgcGCCCGAGCGCaaauggccGGGg -3'
miRNA:   3'- -GGGGUc---UGUGgAU---UGGGCUCGCG--------CCC- -5'
23586 5' -58.5 NC_005261.1 + 109253 0.66 0.839008
Target:  5'- gCCCCAGAguCAUCgguCCCcGGCuCGGGc -3'
miRNA:   3'- -GGGGUCU--GUGGauuGGGcUCGcGCCC- -5'
23586 5' -58.5 NC_005261.1 + 109102 0.74 0.37627
Target:  5'- gUCCCGGACGCC-GGCCaUGAGgGCGGcGg -3'
miRNA:   3'- -GGGGUCUGUGGaUUGG-GCUCgCGCC-C- -5'
23586 5' -58.5 NC_005261.1 + 109062 0.66 0.838212
Target:  5'- gCgCCGGGC-CCUGGCCUuGGCuggauccGCGGGc -3'
miRNA:   3'- -GgGGUCUGuGGAUUGGGcUCG-------CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 109025 0.69 0.664521
Target:  5'- gCCCCAGuCGCgc-GCCC--GCGCGGGc -3'
miRNA:   3'- -GGGGUCuGUGgauUGGGcuCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 108334 0.66 0.822748
Target:  5'- gCUCGcGCGCUgccgcgGGCCCGGGCGCuGGc -3'
miRNA:   3'- gGGGUcUGUGGa-----UUGGGCUCGCGcCC- -5'
23586 5' -58.5 NC_005261.1 + 107870 0.75 0.360565
Target:  5'- gCCCGGcGCGCCggccuucagGGCCgCGAGCGCGGc -3'
miRNA:   3'- gGGGUC-UGUGGa--------UUGG-GCUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 107598 0.66 0.83015
Target:  5'- gUCCCgcaggacggcagcGGGCACagcgUCCGuGCGCGGGa -3'
miRNA:   3'- -GGGG-------------UCUGUGgauuGGGCuCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 107508 0.66 0.830963
Target:  5'- gCUCGGGC-CUggcGGCCCG-GCGcCGGGg -3'
miRNA:   3'- gGGGUCUGuGGa--UUGGGCuCGC-GCCC- -5'
23586 5' -58.5 NC_005261.1 + 107478 0.68 0.713621
Target:  5'- gCCCGGACuag-GGCCCGGGCugagGCuGGGg -3'
miRNA:   3'- gGGGUCUGuggaUUGGGCUCG----CG-CCC- -5'
23586 5' -58.5 NC_005261.1 + 107333 0.72 0.507556
Target:  5'- -gCCGGGCgGCCccAGCCCGAGCuCGGGc -3'
miRNA:   3'- ggGGUCUG-UGGa-UUGGGCUCGcGCCC- -5'
23586 5' -58.5 NC_005261.1 + 107059 0.74 0.409036
Target:  5'- gCCgCCAG-CGCCgcgGCgCUGGGCGCGGGc -3'
miRNA:   3'- -GG-GGUCuGUGGau-UG-GGCUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 106988 0.7 0.59494
Target:  5'- gCgCCGGGCGCCagGGCUCGGGgaagaGCGGGu -3'
miRNA:   3'- -GgGGUCUGUGGa-UUGGGCUCg----CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 106933 0.73 0.426073
Target:  5'- gCCgCCAGcgacacgcGCACCUcGGCCCGGGCGCGc- -3'
miRNA:   3'- -GG-GGUC--------UGUGGA-UUGGGCUCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 106807 0.66 0.814368
Target:  5'- -aCCAG-CGCCgagUGGCCCGccagcAGCGCGuGGu -3'
miRNA:   3'- ggGGUCuGUGG---AUUGGGC-----UCGCGC-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.