Results 81 - 100 of 499 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23586 | 5' | -58.5 | NC_005261.1 | + | 511 | 0.72 | 0.498154 |
Target: 5'- cCCCCAaaaaACACCcc-CCCGGggucGCGCGGGg -3' miRNA: 3'- -GGGGUc---UGUGGauuGGGCU----CGCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 138194 | 0.72 | 0.498154 |
Target: 5'- cCCCCAaaaaACACCcc-CCCGGggucGCGCGGGg -3' miRNA: 3'- -GGGGUc---UGUGGauuGGGCU----CGCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 75106 | 0.72 | 0.499091 |
Target: 5'- cCCCCcGGCACCggggagcucguggagGACCCGuGCGCGc- -3' miRNA: 3'- -GGGGuCUGUGGa--------------UUGGGCuCGCGCcc -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 38074 | 0.72 | 0.507556 |
Target: 5'- uCCCUGGGCGCgCUGugcuucucgcuGgCCGAGCGgGGGc -3' miRNA: 3'- -GGGGUCUGUG-GAU-----------UgGGCUCGCgCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 107333 | 0.72 | 0.507556 |
Target: 5'- -gCCGGGCgGCCccAGCCCGAGCuCGGGc -3' miRNA: 3'- ggGGUCUG-UGGa-UUGGGCUCGcGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 66784 | 0.71 | 0.514182 |
Target: 5'- gCUCCGGgaggcggcggcugcGCGCCgcgGGCCCGGGC-CGGGc -3' miRNA: 3'- -GGGGUC--------------UGUGGa--UUGGGCUCGcGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 8417 | 0.71 | 0.517032 |
Target: 5'- aUCCGGGCGCagggcgcgGGCgCGAGCGCGGa -3' miRNA: 3'- gGGGUCUGUGga------UUGgGCUCGCGCCc -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 134587 | 0.72 | 0.478671 |
Target: 5'- gCUCCAGACGCgCUAgcggcgcACCCGgAGCGCGu- -3' miRNA: 3'- -GGGGUCUGUG-GAU-------UGGGC-UCGCGCcc -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 34038 | 0.73 | 0.450618 |
Target: 5'- gCCUGGACGCCgucccgcccgacGACCCGcGCGCGGc -3' miRNA: 3'- gGGGUCUGUGGa-----------UUGGGCuCGCGCCc -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 122305 | 0.73 | 0.443525 |
Target: 5'- gCCCGGGCcCCggcCCCGGccccggcuGCGCGGGg -3' miRNA: 3'- gGGGUCUGuGGauuGGGCU--------CGCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 51736 | 0.74 | 0.395717 |
Target: 5'- gCCCCugccgcagacAGGCGCC-GGCCCGgccgcguccaucaacGGCGCGGGc -3' miRNA: 3'- -GGGG----------UCUGUGGaUUGGGC---------------UCGCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 60131 | 0.74 | 0.400679 |
Target: 5'- gCCgGGGCcgggGCCUGGgCCG-GCGCGGGg -3' miRNA: 3'- gGGgUCUG----UGGAUUgGGCuCGCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 107059 | 0.74 | 0.409036 |
Target: 5'- gCCgCCAG-CGCCgcgGCgCUGGGCGCGGGc -3' miRNA: 3'- -GG-GGUCuGUGGau-UG-GGCUCGCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 93929 | 0.73 | 0.417502 |
Target: 5'- gCCCgCGGGCAgcggcCCUGGCCCGccgcuGGCgGCGGGc -3' miRNA: 3'- -GGG-GUCUGU-----GGAUUGGGC-----UCG-CGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 77219 | 0.73 | 0.425212 |
Target: 5'- gCCCCAcgacggcGAUGCCggAGCCgGAgGCGCGGGc -3' miRNA: 3'- -GGGGU-------CUGUGGa-UUGGgCU-CGCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 50207 | 0.73 | 0.432135 |
Target: 5'- cCCCCAGGCACCgccgGccgcuuuaacggGCCCGccgggggaggagccGGCGCGaGGu -3' miRNA: 3'- -GGGGUCUGUGGa---U------------UGGGC--------------UCGCGC-CC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 135792 | 0.73 | 0.433005 |
Target: 5'- aCCCCgAGGCGCUggccgagaucgcGGCCCGccgccGCGCGGGg -3' miRNA: 3'- -GGGG-UCUGUGGa-----------UUGGGCu----CGCGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 53915 | 0.73 | 0.433876 |
Target: 5'- gCCCCGGACgcgACCUAcgccuucggcgccGCCgGGGC-CGGGg -3' miRNA: 3'- -GGGGUCUG---UGGAU-------------UGGgCUCGcGCCC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 35114 | 0.73 | 0.434749 |
Target: 5'- aCCCGGGCGCgCUGGCgCCGGGgGCGcuGGc -3' miRNA: 3'- gGGGUCUGUG-GAUUG-GGCUCgCGC--CC- -5' |
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23586 | 5' | -58.5 | NC_005261.1 | + | 39729 | 0.71 | 0.526579 |
Target: 5'- gCCCGuacgccGGCACCUuacccGCCCGAGCccGCGGa -3' miRNA: 3'- gGGGU------CUGUGGAu----UGGGCUCG--CGCCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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