miRNA display CGI


Results 61 - 80 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 5' -58.5 NC_005261.1 + 115260 0.66 0.814368
Target:  5'- gCUCCAGcACGCCgccgcgcgUCUGGGaCGCGGGc -3'
miRNA:   3'- -GGGGUC-UGUGGauu-----GGGCUC-GCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 96316 0.66 0.805832
Target:  5'- -aCCuGACGCCcugacUGGCCUG-GCGCGGc -3'
miRNA:   3'- ggGGuCUGUGG-----AUUGGGCuCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 109864 0.66 0.839008
Target:  5'- cUCCUggGGGCAgCggGGCCCGcGgGCGGGc -3'
miRNA:   3'- -GGGG--UCUGUgGa-UUGGGCuCgCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 4736 0.66 0.839008
Target:  5'- gCCCCAGAguCAUCgguCCCcGGCuCGGGc -3'
miRNA:   3'- -GGGGUCU--GUGGauuGGGcUCGcGCCC- -5'
23586 5' -58.5 NC_005261.1 + 116006 0.66 0.830963
Target:  5'- gCCCgAGGCgGCCUGAgCCGccgacGGCGCGc- -3'
miRNA:   3'- -GGGgUCUG-UGGAUUgGGC-----UCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 107598 0.66 0.83015
Target:  5'- gUCCCgcaggacggcagcGGGCACagcgUCCGuGCGCGGGa -3'
miRNA:   3'- -GGGG-------------UCUGUGgauuGGGCuCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 82734 0.66 0.822748
Target:  5'- gUCCAGccGCGCC-AGCCCGucugcgaucGCGCGGu -3'
miRNA:   3'- gGGGUC--UGUGGaUUGGGCu--------CGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 17154 0.66 0.822748
Target:  5'- aCgUAGAC-CgUcACCCGcGGCGCGGGc -3'
miRNA:   3'- gGgGUCUGuGgAuUGGGC-UCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 3817 0.66 0.822748
Target:  5'- gCUCGcGCGCUgccgcgGGCCCGGGCGCuGGc -3'
miRNA:   3'- gGGGUcUGUGGa-----UUGGGCUCGCGcCC- -5'
23586 5' -58.5 NC_005261.1 + 103051 0.66 0.814368
Target:  5'- gCCCAG-CGCCUGuCCCG-GCaCGGc -3'
miRNA:   3'- gGGGUCuGUGGAUuGGGCuCGcGCCc -5'
23586 5' -58.5 NC_005261.1 + 119880 0.67 0.770277
Target:  5'- gCCgCAGccgagggcguguACACCUGGCgCCGcGaCGCGGGc -3'
miRNA:   3'- -GGgGUC------------UGUGGAUUG-GGCuC-GCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 72442 0.67 0.770277
Target:  5'- cCCCCggcggGGGCGCCcgcggCGAGCGCGGc -3'
miRNA:   3'- -GGGG-----UCUGUGGauuggGCUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 57662 0.67 0.797146
Target:  5'- cCCCCgAGACugCgcgAGCgCC-AGCcgGCGGGg -3'
miRNA:   3'- -GGGG-UCUGugGa--UUG-GGcUCG--CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 100806 0.67 0.797146
Target:  5'- gUCCCGGaagggcgcguGCGCCUGcgccGCCCaGGC-CGGGa -3'
miRNA:   3'- -GGGGUC----------UGUGGAU----UGGGcUCGcGCCC- -5'
23586 5' -58.5 NC_005261.1 + 10213 0.67 0.797146
Target:  5'- cUCCCAGggcccGCGCCU-GCCC-AG-GCGGGc -3'
miRNA:   3'- -GGGGUC-----UGUGGAuUGGGcUCgCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 77723 0.67 0.794513
Target:  5'- cCCCCAGccaagcgGCGCCgguacaacugggAGCCCcuacgcagccgGGGCGgCGGGg -3'
miRNA:   3'- -GGGGUC-------UGUGGa-----------UUGGG-----------CUCGC-GCCC- -5'
23586 5' -58.5 NC_005261.1 + 83905 0.67 0.78832
Target:  5'- gCCgCCGGGCucgggACCgacggGGUCCGAGCGCGcGGc -3'
miRNA:   3'- -GG-GGUCUG-----UGGa----UUGGGCUCGCGC-CC- -5'
23586 5' -58.5 NC_005261.1 + 120508 0.67 0.779361
Target:  5'- aCCCGG-CGCCgcuGCCCGAGUucuccGCGa- -3'
miRNA:   3'- gGGGUCuGUGGau-UGGGCUCG-----CGCcc -5'
23586 5' -58.5 NC_005261.1 + 60938 0.67 0.779361
Target:  5'- aCCCgCGGGC-CgUGGCCCGAGCGg--- -3'
miRNA:   3'- -GGG-GUCUGuGgAUUGGGCUCGCgccc -5'
23586 5' -58.5 NC_005261.1 + 33777 0.67 0.779361
Target:  5'- gCCCgCGGcgaGCGCUgGGCCCc-GCGCGGGc -3'
miRNA:   3'- -GGG-GUC---UGUGGaUUGGGcuCGCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.