miRNA display CGI


Results 81 - 100 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 5' -58.5 NC_005261.1 + 118867 0.67 0.797146
Target:  5'- gCCCGcGGC-CCUGGCCuCGGccacCGCGGGc -3'
miRNA:   3'- gGGGU-CUGuGGAUUGG-GCUc---GCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 19733 0.67 0.797146
Target:  5'- gCCCCGaucuugaGCACCacgcgcuCCCGcgcgGGCGCGGGc -3'
miRNA:   3'- -GGGGUc------UGUGGauu----GGGC----UCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 73587 0.67 0.79627
Target:  5'- cCCCCgcggcggAGGCGgC-GGCCgCGAGCGCGcGGc -3'
miRNA:   3'- -GGGG-------UCUGUgGaUUGG-GCUCGCGC-CC- -5'
23586 5' -58.5 NC_005261.1 + 102 0.67 0.78832
Target:  5'- cCCCCGGGCcCCgccGCCCGcGC-CGGc -3'
miRNA:   3'- -GGGGUCUGuGGau-UGGGCuCGcGCCc -5'
23586 5' -58.5 NC_005261.1 + 62331 0.67 0.78832
Target:  5'- cCCCCAG-CGCCUccaCCGcGCGCGc- -3'
miRNA:   3'- -GGGGUCuGUGGAuugGGCuCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 60938 0.67 0.779361
Target:  5'- aCCCgCGGGC-CgUGGCCCGAGCGg--- -3'
miRNA:   3'- -GGG-GUCUGuGgAUUGGGCUCGCgccc -5'
23586 5' -58.5 NC_005261.1 + 33777 0.67 0.779361
Target:  5'- gCCCgCGGcgaGCGCUgGGCCCc-GCGCGGGc -3'
miRNA:   3'- -GGG-GUC---UGUGGaUUGGGcuCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 103051 0.66 0.814368
Target:  5'- gCCCAG-CGCCUGuCCCG-GCaCGGc -3'
miRNA:   3'- gGGGUCuGUGGAUuGGGCuCGcGCCc -5'
23586 5' -58.5 NC_005261.1 + 3817 0.66 0.822748
Target:  5'- gCUCGcGCGCUgccgcgGGCCCGGGCGCuGGc -3'
miRNA:   3'- gGGGUcUGUGGa-----UUGGGCUCGCGcCC- -5'
23586 5' -58.5 NC_005261.1 + 17154 0.66 0.822748
Target:  5'- aCgUAGAC-CgUcACCCGcGGCGCGGGc -3'
miRNA:   3'- gGgGUCUGuGgAuUGGGC-UCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 112150 0.67 0.761076
Target:  5'- gCCCGcGACGCCgaucauGCucuucgccggCCGcGCGCGGGg -3'
miRNA:   3'- gGGGU-CUGUGGau----UG----------GGCuCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 98289 0.67 0.751768
Target:  5'- gCCCGGcGCGuCCgcgGCCuCGGGgGCGGGc -3'
miRNA:   3'- gGGGUC-UGU-GGau-UGG-GCUCgCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 29110 0.67 0.751768
Target:  5'- -aCC-GACGCCgaggggAGCCCuGGCGcCGGGg -3'
miRNA:   3'- ggGGuCUGUGGa-----UUGGGcUCGC-GCCC- -5'
23586 5' -58.5 NC_005261.1 + 53426 0.68 0.742359
Target:  5'- cCCCCGccgucCGCC-AGCCCGucgGGCGuCGGGa -3'
miRNA:   3'- -GGGGUcu---GUGGaUUGGGC---UCGC-GCCC- -5'
23586 5' -58.5 NC_005261.1 + 49191 0.68 0.732859
Target:  5'- -gCCAGGC-CCUcGGCCgacagCGAGgGCGGGa -3'
miRNA:   3'- ggGGUCUGuGGA-UUGG-----GCUCgCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 109864 0.66 0.839008
Target:  5'- cUCCUggGGGCAgCggGGCCCGcGgGCGGGc -3'
miRNA:   3'- -GGGG--UCUGUgGa-UUGGGCuCgCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 4736 0.66 0.839008
Target:  5'- gCCCCAGAguCAUCgguCCCcGGCuCGGGc -3'
miRNA:   3'- -GGGGUCU--GUGGauuGGGcUCGcGCCC- -5'
23586 5' -58.5 NC_005261.1 + 116006 0.66 0.830963
Target:  5'- gCCCgAGGCgGCCUGAgCCGccgacGGCGCGc- -3'
miRNA:   3'- -GGGgUCUG-UGGAUUgGGC-----UCGCGCcc -5'
23586 5' -58.5 NC_005261.1 + 107598 0.66 0.83015
Target:  5'- gUCCCgcaggacggcagcGGGCACagcgUCCGuGCGCGGGa -3'
miRNA:   3'- -GGGG-------------UCUGUGgauuGGGCuCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 82734 0.66 0.822748
Target:  5'- gUCCAGccGCGCC-AGCCCGucugcgaucGCGCGGu -3'
miRNA:   3'- gGGGUC--UGUGGaUUGGGCu--------CGCGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.