miRNA display CGI


Results 1 - 20 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 5' -58.5 NC_005261.1 + 104419 0.74 0.384295
Target:  5'- cCCCCGGcCGCCcaaagacaAGCCCGccgcccGCGCGGGg -3'
miRNA:   3'- -GGGGUCuGUGGa-------UUGGGCu-----CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 133283 0.75 0.323336
Target:  5'- gCCggGGGCGCCUGGgCCGcGGCGCGGGc -3'
miRNA:   3'- -GGggUCUGUGGAUUgGGC-UCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 101310 0.75 0.330547
Target:  5'- gCCCCGGAguaCGuCCcgGGCCC-AGCGCGGGg -3'
miRNA:   3'- -GGGGUCU---GU-GGa-UUGGGcUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 106807 0.75 0.352885
Target:  5'- gCCgCCAG-CGCCUc-CCCGGGCaGCGGGu -3'
miRNA:   3'- -GG-GGUCuGUGGAuuGGGCUCG-CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 107870 0.75 0.360565
Target:  5'- gCCCGGcGCGCCggccuucagGGCCgCGAGCGCGGc -3'
miRNA:   3'- gGGGUC-UGUGGa--------UUGG-GCUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 10645 0.74 0.36836
Target:  5'- gCCCCgaAGACGCCcagggcGCCCuGGUGCGGGc -3'
miRNA:   3'- -GGGG--UCUGUGGau----UGGGcUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 53681 0.74 0.37627
Target:  5'- gCUCCAGGCGCUgGGCCCGcGUGUGGa -3'
miRNA:   3'- -GGGGUCUGUGGaUUGGGCuCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 89379 0.74 0.37627
Target:  5'- gCCCGGGCGCUgGGCCUGcuGCGCGGcGg -3'
miRNA:   3'- gGGGUCUGUGGaUUGGGCu-CGCGCC-C- -5'
23586 5' -58.5 NC_005261.1 + 121958 0.74 0.381875
Target:  5'- cCCCCGGGCgaGCCgaaGCCCGgccccggcggccccGGCGCGGa -3'
miRNA:   3'- -GGGGUCUG--UGGau-UGGGC--------------UCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 136981 0.76 0.316243
Target:  5'- cCCCCGGGCACg-GACUCGGGCuuccCGGGg -3'
miRNA:   3'- -GGGGUCUGUGgaUUGGGCUCGc---GCCC- -5'
23586 5' -58.5 NC_005261.1 + 133478 0.76 0.316243
Target:  5'- -gCCAGGC-CCaAGCCCGAGC-CGGGg -3'
miRNA:   3'- ggGGUCUGuGGaUUGGGCUCGcGCCC- -5'
23586 5' -58.5 NC_005261.1 + 134312 0.76 0.302411
Target:  5'- aCCCGGAgGCCggcGCCgGcGGCGCGGGc -3'
miRNA:   3'- gGGGUCUgUGGau-UGGgC-UCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 27780 0.82 0.120836
Target:  5'- gCCCAGGCACCcaaacGCCCG-GUGCGGGa -3'
miRNA:   3'- gGGGUCUGUGGau---UGGGCuCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 67157 0.79 0.198495
Target:  5'- gCCCGGACGCCccGCCCGccGCGCGGcGg -3'
miRNA:   3'- gGGGUCUGUGGauUGGGCu-CGCGCC-C- -5'
23586 5' -58.5 NC_005261.1 + 74064 0.78 0.229157
Target:  5'- gCCCGGAcCACCUGcACgCGAuGCGCGGGc -3'
miRNA:   3'- gGGGUCU-GUGGAU-UGgGCU-CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 79948 0.77 0.269884
Target:  5'- cCCCCGGcGCGCC-GGCCCcguGAGCGCGGc -3'
miRNA:   3'- -GGGGUC-UGUGGaUUGGG---CUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 60161 0.77 0.276156
Target:  5'- -gCCAG-CGCCUGGgCCG-GCGCGGGg -3'
miRNA:   3'- ggGGUCuGUGGAUUgGGCuCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 52839 0.76 0.282544
Target:  5'- gCUCgCGGGCGCCUAccagaaGCCCGAGgGCGGcGg -3'
miRNA:   3'- -GGG-GUCUGUGGAU------UGGGCUCgCGCC-C- -5'
23586 5' -58.5 NC_005261.1 + 34310 0.76 0.288394
Target:  5'- --gCAGACGCCgcGCCCGAccuggcgGCGCGGGu -3'
miRNA:   3'- gggGUCUGUGGauUGGGCU-------CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 66616 0.76 0.302411
Target:  5'- gCCCGGGC-CCgcGCCCGGGcCGCGGcGg -3'
miRNA:   3'- gGGGUCUGuGGauUGGGCUC-GCGCC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.