miRNA display CGI


Results 41 - 60 of 499 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23586 5' -58.5 NC_005261.1 + 65068 0.66 0.827697
Target:  5'- cCCCCGGccgagcaacaACGCCgccuggcggcgcgAGCCCGGcccggggaccGCGCGGa -3'
miRNA:   3'- -GGGGUC----------UGUGGa------------UUGGGCU----------CGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 134403 0.66 0.822748
Target:  5'- gCCgCCAG-CGCCcgGGCCCGcggcAGCGCGcGa -3'
miRNA:   3'- -GG-GGUCuGUGGa-UUGGGC----UCGCGC-Cc -5'
23586 5' -58.5 NC_005261.1 + 117988 0.66 0.83015
Target:  5'- gCCCauggagcgcgcggCGGAgCGgCUGGCCaggcagCGGGCGCGGGg -3'
miRNA:   3'- -GGG-------------GUCU-GUgGAUUGG------GCUCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 79092 0.66 0.822748
Target:  5'- gCCCgGGGCGCgCcGGCCUGAGUcggugGcCGGGg -3'
miRNA:   3'- -GGGgUCUGUG-GaUUGGGCUCG-----C-GCCC- -5'
23586 5' -58.5 NC_005261.1 + 19565 0.66 0.822748
Target:  5'- gCCC-GcCGCCcucagcCCCGAGCGCGcGGc -3'
miRNA:   3'- gGGGuCuGUGGauu---GGGCUCGCGC-CC- -5'
23586 5' -58.5 NC_005261.1 + 137675 0.66 0.839008
Target:  5'- aCCCCGGGgcccccCACCgcccCUCGuGCaGCGGGc -3'
miRNA:   3'- -GGGGUCU------GUGGauu-GGGCuCG-CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 102456 0.66 0.80497
Target:  5'- gCCCgCGGGCcuCCUGucucgGCCCGAGCcgccuucGCGGc -3'
miRNA:   3'- -GGG-GUCUGu-GGAU-----UGGGCUCG-------CGCCc -5'
23586 5' -58.5 NC_005261.1 + 108334 0.66 0.822748
Target:  5'- gCUCGcGCGCUgccgcgGGCCCGGGCGCuGGc -3'
miRNA:   3'- gGGGUcUGUGGa-----UUGGGCUCGCGcCC- -5'
23586 5' -58.5 NC_005261.1 + 112473 0.66 0.822748
Target:  5'- uCCCCAGGgugggcaaAUCgauCgCCGAGCGCGGc -3'
miRNA:   3'- -GGGGUCUg-------UGGauuG-GGCUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 134805 0.66 0.830963
Target:  5'- gCCUGGACG-CUGGCCCGcGCGCu-- -3'
miRNA:   3'- gGGGUCUGUgGAUUGGGCuCGCGccc -5'
23586 5' -58.5 NC_005261.1 + 75799 0.66 0.822748
Target:  5'- gCCCGGcgaccggcuCGCgCUGGCCucggCGGGCGCGGa -3'
miRNA:   3'- gGGGUCu--------GUG-GAUUGG----GCUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 40337 0.66 0.830963
Target:  5'- gCCCAGACGguCCgccGGCCCGGGgCuCGGa -3'
miRNA:   3'- gGGGUCUGU--GGa--UUGGGCUC-GcGCCc -5'
23586 5' -58.5 NC_005261.1 + 135967 0.66 0.826054
Target:  5'- gCCCGGcgaggacgaGCGCCggcGGCCUGAGUggccgccggugcgcgGCGGGc -3'
miRNA:   3'- gGGGUC---------UGUGGa--UUGGGCUCG---------------CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 85255 0.66 0.822748
Target:  5'- cCCCCGccugccGGCGCCgca-CCG-GCGCGGc -3'
miRNA:   3'- -GGGGU------CUGUGGauugGGCuCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 41074 0.66 0.822748
Target:  5'- aCCCAGccggccgggccgGCGCC-AGCgccuCCGAGCGUGGc -3'
miRNA:   3'- gGGGUC------------UGUGGaUUG----GGCUCGCGCCc -5'
23586 5' -58.5 NC_005261.1 + 5627 0.66 0.830963
Target:  5'- cCCCCuGGCGgCUcgccGGgCCGGGCguccGCGGGc -3'
miRNA:   3'- -GGGGuCUGUgGA----UUgGGCUCG----CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 109781 0.66 0.830963
Target:  5'- gCCCgccgggAGACGCCaUGGCCgGccgcggugcGCGCGGGu -3'
miRNA:   3'- gGGG------UCUGUGG-AUUGGgCu--------CGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 109623 0.66 0.822748
Target:  5'- gCCaCAGcucCGCC-AGCUCG-GCGCGGGc -3'
miRNA:   3'- gGG-GUCu--GUGGaUUGGGCuCGCGCCC- -5'
23586 5' -58.5 NC_005261.1 + 129973 0.66 0.822748
Target:  5'- aUCCAGAC-CC-AGCCgGGGCuugaGUGGGa -3'
miRNA:   3'- gGGGUCUGuGGaUUGGgCUCG----CGCCC- -5'
23586 5' -58.5 NC_005261.1 + 123209 0.66 0.809264
Target:  5'- gCCCCcGGCACCcgccgacAACuccuccucccgcgcuCCGGGCGCGGc -3'
miRNA:   3'- -GGGGuCUGUGGa------UUG---------------GGCUCGCGCCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.