Results 1 - 20 of 658 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23587 | 3' | -62.3 | NC_005261.1 | + | 83371 | 0.65 | 0.618406 |
Target: 5'- --cGGCCgugcggguucaGCCUGC-GGCGCCGGCa -3' miRNA: 3'- caaCCGGag---------CGGGUGcCCGUGGUCGc -5' |
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23587 | 3' | -62.3 | NC_005261.1 | + | 19208 | 0.65 | 0.617413 |
Target: 5'- --cGGCgaCGUCCgcucauucgucggcGCGGGC-CCAGCa -3' miRNA: 3'- caaCCGgaGCGGG--------------UGCCCGuGGUCGc -5' |
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23587 | 3' | -62.3 | NC_005261.1 | + | 106452 | 0.66 | 0.610467 |
Target: 5'- --cGGCCaCGUCCgcGCGGGCGuCCAagaGCGc -3' miRNA: 3'- caaCCGGaGCGGG--UGCCCGU-GGU---CGC- -5' |
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23587 | 3' | -62.3 | NC_005261.1 | + | 123424 | 0.66 | 0.610467 |
Target: 5'- --cGGgCUCG-CCACGGGC-CgCAGCc -3' miRNA: 3'- caaCCgGAGCgGGUGCCCGuG-GUCGc -5' |
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23587 | 3' | -62.3 | NC_005261.1 | + | 71431 | 0.66 | 0.610467 |
Target: 5'- --cGGCCcggGCCCGC-GGCGCgCAGCc -3' miRNA: 3'- caaCCGGag-CGGGUGcCCGUG-GUCGc -5' |
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23587 | 3' | -62.3 | NC_005261.1 | + | 41597 | 0.66 | 0.610467 |
Target: 5'- --aGGCCugcgagaagaUCGCCCgGCGGcugcGCGCCAcGCGc -3' miRNA: 3'- caaCCGG----------AGCGGG-UGCC----CGUGGU-CGC- -5' |
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23587 | 3' | -62.3 | NC_005261.1 | + | 106239 | 0.66 | 0.610467 |
Target: 5'- --cGGCCgccgCGCCCuacCGGGcCGCC-GCc -3' miRNA: 3'- caaCCGGa---GCGGGu--GCCC-GUGGuCGc -5' |
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23587 | 3' | -62.3 | NC_005261.1 | + | 121821 | 0.66 | 0.610467 |
Target: 5'- aGggGGCCUCuCCCGCaccGC-CCGGCGa -3' miRNA: 3'- -CaaCCGGAGcGGGUGcc-CGuGGUCGC- -5' |
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23587 | 3' | -62.3 | NC_005261.1 | + | 34938 | 0.66 | 0.610467 |
Target: 5'- --gGGCUUCGCggggcugCGCGcGGCAcCCGGCGc -3' miRNA: 3'- caaCCGGAGCGg------GUGC-CCGU-GGUCGC- -5' |
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23587 | 3' | -62.3 | NC_005261.1 | + | 8904 | 0.66 | 0.610467 |
Target: 5'- --cGGCgaggUCGgCgACGcGGCGCCAGCGc -3' miRNA: 3'- caaCCGg---AGCgGgUGC-CCGUGGUCGC- -5' |
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23587 | 3' | -62.3 | NC_005261.1 | + | 33016 | 0.66 | 0.610467 |
Target: 5'- --cGGCCgcgGCCCGCGcGGCGggaaAGCGg -3' miRNA: 3'- caaCCGGag-CGGGUGC-CCGUgg--UCGC- -5' |
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23587 | 3' | -62.3 | NC_005261.1 | + | 44033 | 0.66 | 0.610467 |
Target: 5'- --cGGCCgccgcgcggCGgCCGCGGGCgGgCAGCa -3' miRNA: 3'- caaCCGGa--------GCgGGUGCCCG-UgGUCGc -5' |
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23587 | 3' | -62.3 | NC_005261.1 | + | 91247 | 0.66 | 0.610467 |
Target: 5'- --cGGCgCgcgcUGCCgGCGGGCGgCGGCa -3' miRNA: 3'- caaCCG-Ga---GCGGgUGCCCGUgGUCGc -5' |
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23587 | 3' | -62.3 | NC_005261.1 | + | 70883 | 0.66 | 0.610467 |
Target: 5'- --cGGCCU---UCGCGGGC-CCGGCGc -3' miRNA: 3'- caaCCGGAgcgGGUGCCCGuGGUCGC- -5' |
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23587 | 3' | -62.3 | NC_005261.1 | + | 71875 | 0.66 | 0.610467 |
Target: 5'- --cGGUC-CGCCCgcGCGGGCACgaaaaAGUGc -3' miRNA: 3'- caaCCGGaGCGGG--UGCCCGUGg----UCGC- -5' |
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23587 | 3' | -62.3 | NC_005261.1 | + | 19310 | 0.66 | 0.610467 |
Target: 5'- --cGGCgCcgCGCCCGC-GGCGCCGGa- -3' miRNA: 3'- caaCCG-Ga-GCGGGUGcCCGUGGUCgc -5' |
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23587 | 3' | -62.3 | NC_005261.1 | + | 75527 | 0.66 | 0.610467 |
Target: 5'- -gUGGuguuCCUCGCCaCGCu-GCGCCGGCGc -3' miRNA: 3'- caACC----GGAGCGG-GUGccCGUGGUCGC- -5' |
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23587 | 3' | -62.3 | NC_005261.1 | + | 101493 | 0.66 | 0.610467 |
Target: 5'- -cUGGCCUggguagcugacCGCCgCGguccCGGGUaggGCCGGCGg -3' miRNA: 3'- caACCGGA-----------GCGG-GU----GCCCG---UGGUCGC- -5' |
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23587 | 3' | -62.3 | NC_005261.1 | + | 127688 | 0.66 | 0.610467 |
Target: 5'- --cGGCaggCGCgCCGgGGGCGaCAGCGa -3' miRNA: 3'- caaCCGga-GCG-GGUgCCCGUgGUCGC- -5' |
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23587 | 3' | -62.3 | NC_005261.1 | + | 46018 | 0.66 | 0.610467 |
Target: 5'- --gGGCCgacgaCGCCggcuucgGCGGcuGCGCCAGCGg -3' miRNA: 3'- caaCCGGa----GCGGg------UGCC--CGUGGUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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