miRNA display CGI


Results 1 - 20 of 658 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23587 3' -62.3 NC_005261.1 + 83371 0.65 0.618406
Target:  5'- --cGGCCgugcggguucaGCCUGC-GGCGCCGGCa -3'
miRNA:   3'- caaCCGGag---------CGGGUGcCCGUGGUCGc -5'
23587 3' -62.3 NC_005261.1 + 19208 0.65 0.617413
Target:  5'- --cGGCgaCGUCCgcucauucgucggcGCGGGC-CCAGCa -3'
miRNA:   3'- caaCCGgaGCGGG--------------UGCCCGuGGUCGc -5'
23587 3' -62.3 NC_005261.1 + 44033 0.66 0.610467
Target:  5'- --cGGCCgccgcgcggCGgCCGCGGGCgGgCAGCa -3'
miRNA:   3'- caaCCGGa--------GCgGGUGCCCG-UgGUCGc -5'
23587 3' -62.3 NC_005261.1 + 70883 0.66 0.610467
Target:  5'- --cGGCCU---UCGCGGGC-CCGGCGc -3'
miRNA:   3'- caaCCGGAgcgGGUGCCCGuGGUCGC- -5'
23587 3' -62.3 NC_005261.1 + 41597 0.66 0.610467
Target:  5'- --aGGCCugcgagaagaUCGCCCgGCGGcugcGCGCCAcGCGc -3'
miRNA:   3'- caaCCGG----------AGCGGG-UGCC----CGUGGU-CGC- -5'
23587 3' -62.3 NC_005261.1 + 46018 0.66 0.610467
Target:  5'- --gGGCCgacgaCGCCggcuucgGCGGcuGCGCCAGCGg -3'
miRNA:   3'- caaCCGGa----GCGGg------UGCC--CGUGGUCGC- -5'
23587 3' -62.3 NC_005261.1 + 33016 0.66 0.610467
Target:  5'- --cGGCCgcgGCCCGCGcGGCGggaaAGCGg -3'
miRNA:   3'- caaCCGGag-CGGGUGC-CCGUgg--UCGC- -5'
23587 3' -62.3 NC_005261.1 + 71431 0.66 0.610467
Target:  5'- --cGGCCcggGCCCGC-GGCGCgCAGCc -3'
miRNA:   3'- caaCCGGag-CGGGUGcCCGUG-GUCGc -5'
23587 3' -62.3 NC_005261.1 + 75527 0.66 0.610467
Target:  5'- -gUGGuguuCCUCGCCaCGCu-GCGCCGGCGc -3'
miRNA:   3'- caACC----GGAGCGG-GUGccCGUGGUCGC- -5'
23587 3' -62.3 NC_005261.1 + 101493 0.66 0.610467
Target:  5'- -cUGGCCUggguagcugacCGCCgCGguccCGGGUaggGCCGGCGg -3'
miRNA:   3'- caACCGGA-----------GCGG-GU----GCCCG---UGGUCGC- -5'
23587 3' -62.3 NC_005261.1 + 71875 0.66 0.610467
Target:  5'- --cGGUC-CGCCCgcGCGGGCACgaaaaAGUGc -3'
miRNA:   3'- caaCCGGaGCGGG--UGCCCGUGg----UCGC- -5'
23587 3' -62.3 NC_005261.1 + 106452 0.66 0.610467
Target:  5'- --cGGCCaCGUCCgcGCGGGCGuCCAagaGCGc -3'
miRNA:   3'- caaCCGGaGCGGG--UGCCCGU-GGU---CGC- -5'
23587 3' -62.3 NC_005261.1 + 8904 0.66 0.610467
Target:  5'- --cGGCgaggUCGgCgACGcGGCGCCAGCGc -3'
miRNA:   3'- caaCCGg---AGCgGgUGC-CCGUGGUCGC- -5'
23587 3' -62.3 NC_005261.1 + 19310 0.66 0.610467
Target:  5'- --cGGCgCcgCGCCCGC-GGCGCCGGa- -3'
miRNA:   3'- caaCCG-Ga-GCGGGUGcCCGUGGUCgc -5'
23587 3' -62.3 NC_005261.1 + 106239 0.66 0.610467
Target:  5'- --cGGCCgccgCGCCCuacCGGGcCGCC-GCc -3'
miRNA:   3'- caaCCGGa---GCGGGu--GCCC-GUGGuCGc -5'
23587 3' -62.3 NC_005261.1 + 121821 0.66 0.610467
Target:  5'- aGggGGCCUCuCCCGCaccGC-CCGGCGa -3'
miRNA:   3'- -CaaCCGGAGcGGGUGcc-CGuGGUCGC- -5'
23587 3' -62.3 NC_005261.1 + 127688 0.66 0.610467
Target:  5'- --cGGCaggCGCgCCGgGGGCGaCAGCGa -3'
miRNA:   3'- caaCCGga-GCG-GGUgCCCGUgGUCGC- -5'
23587 3' -62.3 NC_005261.1 + 91247 0.66 0.610467
Target:  5'- --cGGCgCgcgcUGCCgGCGGGCGgCGGCa -3'
miRNA:   3'- caaCCG-Ga---GCGGgUGCCCGUgGUCGc -5'
23587 3' -62.3 NC_005261.1 + 123424 0.66 0.610467
Target:  5'- --cGGgCUCG-CCACGGGC-CgCAGCc -3'
miRNA:   3'- caaCCgGAGCgGGUGCCCGuG-GUCGc -5'
23587 3' -62.3 NC_005261.1 + 34938 0.66 0.610467
Target:  5'- --gGGCUUCGCggggcugCGCGcGGCAcCCGGCGc -3'
miRNA:   3'- caaCCGGAGCGg------GUGC-CCGU-GGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.