miRNA display CGI


Results 1 - 20 of 658 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23587 3' -62.3 NC_005261.1 + 108592 1.07 0.000864
Target:  5'- cGUUGGCCUCGCCCACGGGCACCAGCGc -3'
miRNA:   3'- -CAACCGGAGCGGGUGCCCGUGGUCGC- -5'
23587 3' -62.3 NC_005261.1 + 63012 0.85 0.0382
Target:  5'- --cGGCCgCGCCCgcGCGGGCGCCGGCGc -3'
miRNA:   3'- caaCCGGaGCGGG--UGCCCGUGGUCGC- -5'
23587 3' -62.3 NC_005261.1 + 75202 0.81 0.068121
Target:  5'- ---cGCCUCG-CCGCGGGCGCCGGCGc -3'
miRNA:   3'- caacCGGAGCgGGUGCCCGUGGUCGC- -5'
23587 3' -62.3 NC_005261.1 + 78117 0.81 0.071762
Target:  5'- --cGGCCUacgUGCCCGCGGGCgcgcugGCCAGCGu -3'
miRNA:   3'- caaCCGGA---GCGGGUGCCCG------UGGUCGC- -5'
23587 3' -62.3 NC_005261.1 + 62814 0.8 0.079614
Target:  5'- --gGGCCauaUCGCCgCGCgGGGCACCGGCGg -3'
miRNA:   3'- caaCCGG---AGCGG-GUG-CCCGUGGUCGC- -5'
23587 3' -62.3 NC_005261.1 + 5595 0.8 0.079614
Target:  5'- --gGGCCgccgCGCCCGCGuccucGGCGCCAGCGc -3'
miRNA:   3'- caaCCGGa---GCGGGUGC-----CCGUGGUCGC- -5'
23587 3' -62.3 NC_005261.1 + 48904 0.8 0.083842
Target:  5'- aGUUGGCCUCuagcgcgaGCCC--GGGCGCCAGCGc -3'
miRNA:   3'- -CAACCGGAG--------CGGGugCCCGUGGUCGC- -5'
23587 3' -62.3 NC_005261.1 + 10339 0.79 0.092947
Target:  5'- --aGGCCcggGCCCgACGGGCGCCGGCGc -3'
miRNA:   3'- caaCCGGag-CGGG-UGCCCGUGGUCGC- -5'
23587 3' -62.3 NC_005261.1 + 102296 0.79 0.097845
Target:  5'- --gGGCCUgggCGCCCGCuGGGCugCGGCGc -3'
miRNA:   3'- caaCCGGA---GCGGGUG-CCCGugGUCGC- -5'
23587 3' -62.3 NC_005261.1 + 60106 0.78 0.10565
Target:  5'- -cUGGCCagcgCGCCCGCGGGCACguaGGCc -3'
miRNA:   3'- caACCGGa---GCGGGUGCCCGUGg--UCGc -5'
23587 3' -62.3 NC_005261.1 + 20550 0.78 0.111175
Target:  5'- --cGGCCUCG-CCGCGGGC-CCGGCc -3'
miRNA:   3'- caaCCGGAGCgGGUGCCCGuGGUCGc -5'
23587 3' -62.3 NC_005261.1 + 12923 0.78 0.111175
Target:  5'- --aGGCCgcggagCGCCCGCGGGU-CCGGCGc -3'
miRNA:   3'- caaCCGGa-----GCGGGUGCCCGuGGUCGC- -5'
23587 3' -62.3 NC_005261.1 + 40905 0.78 0.111175
Target:  5'- -cUGGCUUUGCCCuACGGGCcCCGGCc -3'
miRNA:   3'- caACCGGAGCGGG-UGCCCGuGGUCGc -5'
23587 3' -62.3 NC_005261.1 + 59143 0.78 0.114038
Target:  5'- --aGGCCggcgCGCCC-CGGGCGCgCGGCGc -3'
miRNA:   3'- caaCCGGa---GCGGGuGCCCGUG-GUCGC- -5'
23587 3' -62.3 NC_005261.1 + 19832 0.78 0.116969
Target:  5'- --cGGCUgcggCGCCCGCGGcCGCCAGCGc -3'
miRNA:   3'- caaCCGGa---GCGGGUGCCcGUGGUCGC- -5'
23587 3' -62.3 NC_005261.1 + 59871 0.77 0.12619
Target:  5'- --cGGCCUCGU--ACGGGUGCCGGCGg -3'
miRNA:   3'- caaCCGGAGCGggUGCCCGUGGUCGC- -5'
23587 3' -62.3 NC_005261.1 + 44307 0.77 0.132707
Target:  5'- --gGGCCgcuGCCCGCGGGCGCC-GCa -3'
miRNA:   3'- caaCCGGag-CGGGUGCCCGUGGuCGc -5'
23587 3' -62.3 NC_005261.1 + 125497 0.77 0.139533
Target:  5'- --gGGCC-CGCCCA-GGGgGCCGGCGg -3'
miRNA:   3'- caaCCGGaGCGGGUgCCCgUGGUCGC- -5'
23587 3' -62.3 NC_005261.1 + 102592 0.76 0.141997
Target:  5'- --cGGCCUCGCCCGCGccuuccgcguccucGcCGCCAGCGg -3'
miRNA:   3'- caaCCGGAGCGGGUGC--------------CcGUGGUCGC- -5'
23587 3' -62.3 NC_005261.1 + 50148 0.76 0.144501
Target:  5'- cGUUGGCCgUCGCguccaucgccacaauCCGCGGGCACCGccGCa -3'
miRNA:   3'- -CAACCGG-AGCG---------------GGUGCCCGUGGU--CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.