miRNA display CGI


Results 1 - 20 of 658 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23587 3' -62.3 NC_005261.1 + 61364 0.75 0.187628
Target:  5'- --cGGCCUC-CUCGcCGGGCGCCAGgCGg -3'
miRNA:   3'- caaCCGGAGcGGGU-GCCCGUGGUC-GC- -5'
23587 3' -62.3 NC_005261.1 + 7438 0.76 0.146679
Target:  5'- --gGGCgUCGUCCGCGGuGCGgCCAGCGc -3'
miRNA:   3'- caaCCGgAGCGGGUGCC-CGU-GGUCGC- -5'
23587 3' -62.3 NC_005261.1 + 101229 0.76 0.146679
Target:  5'- -cUGGCCccgcgcaGCCCGCGGGCuCCGGCu -3'
miRNA:   3'- caACCGGag-----CGGGUGCCCGuGGUCGc -5'
23587 3' -62.3 NC_005261.1 + 53555 0.76 0.150376
Target:  5'- --cGGCUUCGUgugcgcggCCGCGGGCGCgGGCGg -3'
miRNA:   3'- caaCCGGAGCG--------GGUGCCCGUGgUCGC- -5'
23587 3' -62.3 NC_005261.1 + 55208 0.76 0.150376
Target:  5'- --cGGCC-CuCCCGgGGGCGCCGGCGa -3'
miRNA:   3'- caaCCGGaGcGGGUgCCCGUGGUCGC- -5'
23587 3' -62.3 NC_005261.1 + 106023 0.76 0.16198
Target:  5'- --cGGCCggcaGCUCGuCGGGCGCCAGCu -3'
miRNA:   3'- caaCCGGag--CGGGU-GCCCGUGGUCGc -5'
23587 3' -62.3 NC_005261.1 + 69958 0.75 0.166024
Target:  5'- --gGGCCcCGCCgCGCGGGCGCaGGCGc -3'
miRNA:   3'- caaCCGGaGCGG-GUGCCCGUGgUCGC- -5'
23587 3' -62.3 NC_005261.1 + 117035 0.75 0.170159
Target:  5'- --gGGCCagCGUCCGCGGccgcgcucGCGCCAGCGg -3'
miRNA:   3'- caaCCGGa-GCGGGUGCC--------CGUGGUCGC- -5'
23587 3' -62.3 NC_005261.1 + 21602 0.75 0.183118
Target:  5'- --gGGCCUCGCCCucgucgGCGGGCG--GGCGg -3'
miRNA:   3'- caaCCGGAGCGGG------UGCCCGUggUCGC- -5'
23587 3' -62.3 NC_005261.1 + 38221 0.76 0.146679
Target:  5'- -gUGGCCgCGCUCAUGGGCGCCuucauGCa -3'
miRNA:   3'- caACCGGaGCGGGUGCCCGUGGu----CGc -5'
23587 3' -62.3 NC_005261.1 + 108945 0.76 0.144501
Target:  5'- --aGGCCUCGCCggagggcgucagcaGCGGGCccuCCAGCGg -3'
miRNA:   3'- caaCCGGAGCGGg-------------UGCCCGu--GGUCGC- -5'
23587 3' -62.3 NC_005261.1 + 125497 0.77 0.139533
Target:  5'- --gGGCC-CGCCCA-GGGgGCCGGCGg -3'
miRNA:   3'- caaCCGGaGCGGGUgCCCgUGGUCGC- -5'
23587 3' -62.3 NC_005261.1 + 78117 0.81 0.071762
Target:  5'- --cGGCCUacgUGCCCGCGGGCgcgcugGCCAGCGu -3'
miRNA:   3'- caaCCGGA---GCGGGUGCCCG------UGGUCGC- -5'
23587 3' -62.3 NC_005261.1 + 5595 0.8 0.079614
Target:  5'- --gGGCCgccgCGCCCGCGuccucGGCGCCAGCGc -3'
miRNA:   3'- caaCCGGa---GCGGGUGC-----CCGUGGUCGC- -5'
23587 3' -62.3 NC_005261.1 + 10339 0.79 0.092947
Target:  5'- --aGGCCcggGCCCgACGGGCGCCGGCGc -3'
miRNA:   3'- caaCCGGag-CGGG-UGCCCGUGGUCGC- -5'
23587 3' -62.3 NC_005261.1 + 102296 0.79 0.097845
Target:  5'- --gGGCCUgggCGCCCGCuGGGCugCGGCGc -3'
miRNA:   3'- caaCCGGA---GCGGGUG-CCCGugGUCGC- -5'
23587 3' -62.3 NC_005261.1 + 40905 0.78 0.111175
Target:  5'- -cUGGCUUUGCCCuACGGGCcCCGGCc -3'
miRNA:   3'- caACCGGAGCGGG-UGCCCGuGGUCGc -5'
23587 3' -62.3 NC_005261.1 + 12923 0.78 0.111175
Target:  5'- --aGGCCgcggagCGCCCGCGGGU-CCGGCGc -3'
miRNA:   3'- caaCCGGa-----GCGGGUGCCCGuGGUCGC- -5'
23587 3' -62.3 NC_005261.1 + 20550 0.78 0.111175
Target:  5'- --cGGCCUCG-CCGCGGGC-CCGGCc -3'
miRNA:   3'- caaCCGGAGCgGGUGCCCGuGGUCGc -5'
23587 3' -62.3 NC_005261.1 + 19832 0.78 0.116969
Target:  5'- --cGGCUgcggCGCCCGCGGcCGCCAGCGc -3'
miRNA:   3'- caaCCGGa---GCGGGUGCCcGUGGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.