miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23587 5' -56.7 NC_005261.1 + 38361 0.66 0.872352
Target:  5'- cGCGCCGAG-CGGCGGcggCgCGCGGc -3'
miRNA:   3'- cCGUGGCUCaGCCGUUagaG-GCGCUu -5'
23587 5' -56.7 NC_005261.1 + 112125 0.66 0.872352
Target:  5'- cGGCGCUGuacCGGCAgcuaGUCgugcCCGCGAc -3'
miRNA:   3'- -CCGUGGCucaGCCGU----UAGa---GGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 118936 0.66 0.872352
Target:  5'- cGGCGCCGcG-CGGCugg--CCGCGGc -3'
miRNA:   3'- -CCGUGGCuCaGCCGuuagaGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 91648 0.66 0.872352
Target:  5'- cGGgGCCGuGUCGcGCGAgg-CCGCGc- -3'
miRNA:   3'- -CCgUGGCuCAGC-CGUUagaGGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 13096 0.66 0.864907
Target:  5'- gGGCGgCGGGcUCGGCucgggggcGUCggcggCCGCGGGg -3'
miRNA:   3'- -CCGUgGCUC-AGCCGu-------UAGa----GGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 125301 0.66 0.864907
Target:  5'- gGGCGCCGGacccgCGGgcg-CUCCGCGGc -3'
miRNA:   3'- -CCGUGGCUca---GCCguuaGAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 49044 0.66 0.864907
Target:  5'- cGGCGCCcgcGAG-CGGCuccagguUgUCCGCGGu -3'
miRNA:   3'- -CCGUGG---CUCaGCCGuu-----AgAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 101144 0.66 0.864907
Target:  5'- aGGCuGCCGcgcGG-CGGCGcgCcgCCGCGAAg -3'
miRNA:   3'- -CCG-UGGC---UCaGCCGUuaGa-GGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 20114 0.66 0.864151
Target:  5'- cGGCG-CGAGcCGGCGgcgcagcGUCUgCGCGGc -3'
miRNA:   3'- -CCGUgGCUCaGCCGU-------UAGAgGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 43388 0.66 0.857252
Target:  5'- aGCGCCGAGgccaGGCGcg--CCGUGAAg -3'
miRNA:   3'- cCGUGGCUCag--CCGUuagaGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 74248 0.66 0.857252
Target:  5'- cGCGCCGAGUacgucccauucgCGcGCGcgCgUCCGCGGc -3'
miRNA:   3'- cCGUGGCUCA------------GC-CGUuaG-AGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 71504 0.66 0.857252
Target:  5'- uGCGCgCGAaaGUCGGCGGgcUCgUCCGCGu- -3'
miRNA:   3'- cCGUG-GCU--CAGCCGUU--AG-AGGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 62298 0.66 0.857252
Target:  5'- cGGCGCCGcgcGGgcgcgCGGCGGcC-CCGCGGu -3'
miRNA:   3'- -CCGUGGC---UCa----GCCGUUaGaGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 125949 0.66 0.857252
Target:  5'- uGGCGCgGGGUcgcaCGGCAGcacuucgCUCgGCGAc -3'
miRNA:   3'- -CCGUGgCUCA----GCCGUUa------GAGgCGCUu -5'
23587 5' -56.7 NC_005261.1 + 126950 0.66 0.857252
Target:  5'- gGGCGCCGGGcgcgggggCGGCAGcgCgaaCCGCGc- -3'
miRNA:   3'- -CCGUGGCUCa-------GCCGUUa-Ga--GGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 60584 0.66 0.857252
Target:  5'- aGGCGCCGGccGUCGGCGAUggcgCCGg--- -3'
miRNA:   3'- -CCGUGGCU--CAGCCGUUAga--GGCgcuu -5'
23587 5' -56.7 NC_005261.1 + 88263 0.66 0.854915
Target:  5'- cGGCGCCGGGgaugacgaCGGCGccgccuccuuuuuuGcgcggCUCCGCGGg -3'
miRNA:   3'- -CCGUGGCUCa-------GCCGU--------------Ua----GAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 68625 0.66 0.849391
Target:  5'- gGGCGgCGGG-CGcGCGGUCgaaggCCGUGAGc -3'
miRNA:   3'- -CCGUgGCUCaGC-CGUUAGa----GGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 31600 0.66 0.849391
Target:  5'- cGuCGCCGAgcucGUCGcGCGG-CUCCGCGGc -3'
miRNA:   3'- cC-GUGGCU----CAGC-CGUUaGAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 137582 0.66 0.849391
Target:  5'- cGGCGCCGGGgacgCGGCGcuggCggCCGCc-- -3'
miRNA:   3'- -CCGUGGCUCa---GCCGUua--Ga-GGCGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.