miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23587 5' -56.7 NC_005261.1 + 102471 0.67 0.824647
Target:  5'- aGGCGCCGGaccuccUCGGCGcgCcgCCGCGc- -3'
miRNA:   3'- -CCGUGGCUc-----AGCCGUuaGa-GGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 55228 0.67 0.816036
Target:  5'- aGGCGgCGAGggCGGCAGcaccgcagCcgCCGCGAGg -3'
miRNA:   3'- -CCGUgGCUCa-GCCGUUa-------Ga-GGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 103282 0.67 0.807257
Target:  5'- cGCGCCGGGUgccgCGcGCAGcC-CCGCGAAg -3'
miRNA:   3'- cCGUGGCUCA----GC-CGUUaGaGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 62392 0.67 0.798318
Target:  5'- cGGCACCGucGUgGGgAAgagcagCUCCGCGc- -3'
miRNA:   3'- -CCGUGGCu-CAgCCgUUa-----GAGGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 70231 0.67 0.797415
Target:  5'- uGGCGCCGcGcgcaaacucgaccUCGGCGcgCuugUCCGCGAu -3'
miRNA:   3'- -CCGUGGCuC-------------AGCCGUuaG---AGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 16100 0.67 0.789227
Target:  5'- cGGCACCGGcggCGGCcacgcacgcGAUCaCCGCGGc -3'
miRNA:   3'- -CCGUGGCUca-GCCG---------UUAGaGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 21569 0.67 0.78831
Target:  5'- cGGCGCCGcggagcaGGUCGGCGG-CgggCgCGCGGg -3'
miRNA:   3'- -CCGUGGC-------UCAGCCGUUaGa--G-GCGCUu -5'
23587 5' -56.7 NC_005261.1 + 3034 0.67 0.789227
Target:  5'- uGCGCCGccUCGGCcaugCUCCGCGc- -3'
miRNA:   3'- cCGUGGCucAGCCGuua-GAGGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 33824 0.67 0.789227
Target:  5'- cGGCGCCGuuUCGGCGcgCUUuauggCGCGc- -3'
miRNA:   3'- -CCGUGGCucAGCCGUuaGAG-----GCGCuu -5'
23587 5' -56.7 NC_005261.1 + 120393 0.67 0.798318
Target:  5'- cGCACCGAGcagagCGGCG-UCUgCGCuGAGc -3'
miRNA:   3'- cCGUGGCUCa----GCCGUuAGAgGCG-CUU- -5'
23587 5' -56.7 NC_005261.1 + 55220 0.67 0.807257
Target:  5'- gGGCGCCGGcGaCGGCGG-CUCggugCGCGAGg -3'
miRNA:   3'- -CCGUGGCU-CaGCCGUUaGAG----GCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 75669 0.67 0.807257
Target:  5'- uGGCGCCGGGgcgcaugcuggCGGCGccUCUCgGCGu- -3'
miRNA:   3'- -CCGUGGCUCa----------GCCGUu-AGAGgCGCuu -5'
23587 5' -56.7 NC_005261.1 + 12793 0.67 0.807257
Target:  5'- cGGCGagcUCGucGUCGGCGucgcugccGUcCUCCGCGAAg -3'
miRNA:   3'- -CCGU---GGCu-CAGCCGU--------UA-GAGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 132655 0.67 0.833082
Target:  5'- gGGCGCCc--UCGGCGcccccAUCUCCGCc-- -3'
miRNA:   3'- -CCGUGGcucAGCCGU-----UAGAGGCGcuu -5'
23587 5' -56.7 NC_005261.1 + 88049 0.67 0.833082
Target:  5'- uGCACCGGcugcugCGGCGGUgC-CCGCGGAu -3'
miRNA:   3'- cCGUGGCUca----GCCGUUA-GaGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 69005 0.67 0.798318
Target:  5'- gGGCGCCGcggcuucGUUGGCGAg-UCCGUGGc -3'
miRNA:   3'- -CCGUGGCu------CAGCCGUUagAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 100967 0.67 0.816036
Target:  5'- cGGCACgGc-UCGGCcaggauGGUCUCCGCGc- -3'
miRNA:   3'- -CCGUGgCucAGCCG------UUAGAGGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 70833 0.67 0.816036
Target:  5'- cGGCGCUG-GUCcuGGCGcgcgcggcGUCUUCGCGGc -3'
miRNA:   3'- -CCGUGGCuCAG--CCGU--------UAGAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 57907 0.67 0.816036
Target:  5'- cGGgGCCGcGGUCGaGCGcGUCUaCCGUGAGc -3'
miRNA:   3'- -CCgUGGC-UCAGC-CGU-UAGA-GGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 69083 0.67 0.815166
Target:  5'- cGGCGCgGugcggguAGUUGGCGAcguagcUCUCgGCGAGg -3'
miRNA:   3'- -CCGUGgC-------UCAGCCGUU------AGAGgCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.