miRNA display CGI


Results 61 - 80 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23587 5' -56.7 NC_005261.1 + 136596 0.68 0.74182
Target:  5'- cGGCGCUGGGgcUCGGgGAgccggaCUUCGCGGAg -3'
miRNA:   3'- -CCGUGGCUC--AGCCgUUa-----GAGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 37089 0.68 0.74182
Target:  5'- cGCGCCGccgcgCGGCAGcCUCgCGCGAGg -3'
miRNA:   3'- cCGUGGCuca--GCCGUUaGAG-GCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 101516 0.68 0.74182
Target:  5'- cGGUcCCGGGUagggcCGGCGGUCagCGCGGGg -3'
miRNA:   3'- -CCGuGGCUCA-----GCCGUUAGagGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 21704 0.68 0.761137
Target:  5'- gGGCGCgGAG-CGGCGGgccUCgcgccgCCGCGGc -3'
miRNA:   3'- -CCGUGgCUCaGCCGUU---AGa-----GGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 108377 0.68 0.757308
Target:  5'- cGGCGCCGcgcGGcCGGCGAgcacggcgcgcagCUCgGCGAGc -3'
miRNA:   3'- -CCGUGGC---UCaGCCGUUa------------GAGgCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 74889 0.68 0.732011
Target:  5'- cGGCgGCgGAGUCGGCGG-C-CCGCGc- -3'
miRNA:   3'- -CCG-UGgCUCAGCCGUUaGaGGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 129326 0.67 0.824647
Target:  5'- uGGCGCCGcGUCGcCGAccUCgCCGCGGu -3'
miRNA:   3'- -CCGUGGCuCAGCcGUU--AGaGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 115752 0.67 0.824647
Target:  5'- cGCACaCGucGUCGGCcccGUCUCgGCGGc -3'
miRNA:   3'- cCGUG-GCu-CAGCCGu--UAGAGgCGCUu -5'
23587 5' -56.7 NC_005261.1 + 103282 0.67 0.807257
Target:  5'- cGCGCCGGGUgccgCGcGCAGcC-CCGCGAAg -3'
miRNA:   3'- cCGUGGCUCA----GC-CGUUaGaGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 118409 0.67 0.807257
Target:  5'- gGGCGCCGcAGcCGcGCuggcuGUCgccgCCGCGGAc -3'
miRNA:   3'- -CCGUGGC-UCaGC-CGu----UAGa---GGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 55228 0.67 0.816036
Target:  5'- aGGCGgCGAGggCGGCAGcaccgcagCcgCCGCGAGg -3'
miRNA:   3'- -CCGUgGCUCa-GCCGUUa-------Ga-GGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 102471 0.67 0.824647
Target:  5'- aGGCGCCGGaccuccUCGGCGcgCcgCCGCGc- -3'
miRNA:   3'- -CCGUGGCUc-----AGCCGUuaGa-GGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 74713 0.67 0.833082
Target:  5'- gGGCgcggaACCGGGccgCGGCAGcggCCGCGGAc -3'
miRNA:   3'- -CCG-----UGGCUCa--GCCGUUagaGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 28137 0.67 0.833082
Target:  5'- gGGCGCCc--UCGGCGcccccAUCUCCGCc-- -3'
miRNA:   3'- -CCGUGGcucAGCCGU-----UAGAGGCGcuu -5'
23587 5' -56.7 NC_005261.1 + 21569 0.67 0.78831
Target:  5'- cGGCGCCGcggagcaGGUCGGCGG-CgggCgCGCGGg -3'
miRNA:   3'- -CCGUGGC-------UCAGCCGUUaGa--G-GCGCUu -5'
23587 5' -56.7 NC_005261.1 + 26381 0.67 0.807257
Target:  5'- aGGCGC--GGUUGGCGcgcacgcgCUCCGCGAc -3'
miRNA:   3'- -CCGUGgcUCAGCCGUua------GAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 55220 0.67 0.807257
Target:  5'- gGGCGCCGGcGaCGGCGG-CUCggugCGCGAGg -3'
miRNA:   3'- -CCGUGGCU-CaGCCGUUaGAG----GCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 3034 0.67 0.789227
Target:  5'- uGCGCCGccUCGGCcaugCUCCGCGc- -3'
miRNA:   3'- cCGUGGCucAGCCGuua-GAGGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 132655 0.67 0.833082
Target:  5'- gGGCGCCc--UCGGCGcccccAUCUCCGCc-- -3'
miRNA:   3'- -CCGUGGcucAGCCGU-----UAGAGGCGcuu -5'
23587 5' -56.7 NC_005261.1 + 88049 0.67 0.833082
Target:  5'- uGCACCGGcugcugCGGCGGUgC-CCGCGGAu -3'
miRNA:   3'- cCGUGGCUca----GCCGUUA-GaGGCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.