miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23587 5' -56.7 NC_005261.1 + 108626 1.08 0.002324
Target:  5'- cGGCACCGAGUCGGCAAUCUCCGCGAAg -3'
miRNA:   3'- -CCGUGGCUCAGCCGUUAGAGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 47002 0.85 0.093462
Target:  5'- aGCGCCGGGUCGGCGAUCUUgGCGu- -3'
miRNA:   3'- cCGUGGCUCAGCCGUUAGAGgCGCuu -5'
23587 5' -56.7 NC_005261.1 + 105182 0.82 0.149726
Target:  5'- cGGCGCCGAGUCcuGGCc--CUCCGCGGAc -3'
miRNA:   3'- -CCGUGGCUCAG--CCGuuaGAGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 665 0.82 0.149726
Target:  5'- cGGCGCCGAGUCcuGGCc--CUCCGCGGAc -3'
miRNA:   3'- -CCGUGGCUCAG--CCGuuaGAGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 94632 0.77 0.26975
Target:  5'- cGGCGCCGucGUCGGCGcgcgcgaacaugcggCUCCGCGAGc -3'
miRNA:   3'- -CCGUGGCu-CAGCCGUua-------------GAGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 122095 0.75 0.358017
Target:  5'- cGGCAUCgGGGUCGGC-AUCgcggCCGCGGu -3'
miRNA:   3'- -CCGUGG-CUCAGCCGuUAGa---GGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 132571 0.75 0.382402
Target:  5'- cGGCugCGAagacGUCGGCGcgC-CCGCGGAc -3'
miRNA:   3'- -CCGugGCU----CAGCCGUuaGaGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 35054 0.75 0.390772
Target:  5'- cGGCgGCCGcgcGG-CGGCGGUCUCCGCGc- -3'
miRNA:   3'- -CCG-UGGC---UCaGCCGUUAGAGGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 72575 0.74 0.407001
Target:  5'- gGGCGCCGAGUCccaagagGGCGAUCggCGCGc- -3'
miRNA:   3'- -CCGUGGCUCAG-------CCGUUAGagGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 4530 0.74 0.434368
Target:  5'- cGGCGCCgGGGUCGcGCAG-CUCCcaGCGGAg -3'
miRNA:   3'- -CCGUGG-CUCAGC-CGUUaGAGG--CGCUU- -5'
23587 5' -56.7 NC_005261.1 + 98135 0.73 0.480653
Target:  5'- cGGCACCGGcggccGUCGGCGGcaaggCCGCGGg -3'
miRNA:   3'- -CCGUGGCU-----CAGCCGUUaga--GGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 33155 0.73 0.490199
Target:  5'- gGGCGCgGAGUCGGCGGaccCUgCCGgGGAg -3'
miRNA:   3'- -CCGUGgCUCAGCCGUUa--GA-GGCgCUU- -5'
23587 5' -56.7 NC_005261.1 + 32277 0.72 0.509549
Target:  5'- gGGCGCCGAGgccaucgaCGGCGcgCU-CGCGGAg -3'
miRNA:   3'- -CCGUGGCUCa-------GCCGUuaGAgGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 132912 0.72 0.509549
Target:  5'- cGGCGCCGAG-CGGCGG-CUCCuGCc-- -3'
miRNA:   3'- -CCGUGGCUCaGCCGUUaGAGG-CGcuu -5'
23587 5' -56.7 NC_005261.1 + 118849 0.72 0.509549
Target:  5'- cGGCGCgGAGggCGGCGcgC-CCGCGGc -3'
miRNA:   3'- -CCGUGgCUCa-GCCGUuaGaGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 87445 0.72 0.509549
Target:  5'- cGGCGCCGGGgCGGCcgccgCCGCGGu -3'
miRNA:   3'- -CCGUGGCUCaGCCGuuagaGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 103506 0.72 0.529212
Target:  5'- cGGCGCCGcGGaCGGCGGcgUCCGCGGc -3'
miRNA:   3'- -CCGUGGC-UCaGCCGUUagAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 74050 0.72 0.529212
Target:  5'- cGCGCCGGGgggcugCGGCAG-CUgCGCGAc -3'
miRNA:   3'- cCGUGGCUCa-----GCCGUUaGAgGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 36697 0.72 0.539148
Target:  5'- uGGCgGCCGAGgCGGCGcgCgaCCGCGAc -3'
miRNA:   3'- -CCG-UGGCUCaGCCGUuaGa-GGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 70648 0.72 0.549147
Target:  5'- cGGCGCUGAGguUCGGCGccgCggCCGCGGg -3'
miRNA:   3'- -CCGUGGCUC--AGCCGUua-Ga-GGCGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.