Results 21 - 40 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23587 | 5' | -56.7 | NC_005261.1 | + | 57421 | 0.71 | 0.559203 |
Target: 5'- cGGCGCUGGGcUCGGCGGggcUCUaCCGCa-- -3' miRNA: 3'- -CCGUGGCUC-AGCCGUU---AGA-GGCGcuu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 34699 | 0.71 | 0.56931 |
Target: 5'- gGGgGCCGAGgaggCGGCGGaugCCGCGGAc -3' miRNA: 3'- -CCgUGGCUCa---GCCGUUagaGGCGCUU- -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 47700 | 0.71 | 0.56931 |
Target: 5'- cGGCGCCGcGUCGGCGGcgucgggggccUCcUCgGCGGAc -3' miRNA: 3'- -CCGUGGCuCAGCCGUU-----------AG-AGgCGCUU- -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 79418 | 0.71 | 0.579461 |
Target: 5'- aGGC-CCGuGUCGGCGAgCUCgGCGc- -3' miRNA: 3'- -CCGuGGCuCAGCCGUUaGAGgCGCuu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 43409 | 0.71 | 0.610115 |
Target: 5'- aGGCGCCGGGggCGGC---CUCCGCc-- -3' miRNA: 3'- -CCGUGGCUCa-GCCGuuaGAGGCGcuu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 85562 | 0.7 | 0.620376 |
Target: 5'- cGGCGCCGcgaGGuUCGGCGccgcgaccgcgGcCUCCGCGAGc -3' miRNA: 3'- -CCGUGGC---UC-AGCCGU-----------UaGAGGCGCUU- -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 43811 | 0.7 | 0.620376 |
Target: 5'- gGGCGCCGGG-CGcGCc--CUCCGUGGAg -3' miRNA: 3'- -CCGUGGCUCaGC-CGuuaGAGGCGCUU- -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 110309 | 0.7 | 0.630646 |
Target: 5'- cGcCGCCGAGUaCGGCAAccgCgccgCCGCGGAc -3' miRNA: 3'- cC-GUGGCUCA-GCCGUUa--Ga---GGCGCUU- -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 97501 | 0.7 | 0.637836 |
Target: 5'- gGGCGCCGGGgccgccggaacguuUCGGC--UCgCCGCGAu -3' miRNA: 3'- -CCGUGGCUC--------------AGCCGuuAGaGGCGCUu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 51368 | 0.7 | 0.638863 |
Target: 5'- cGGCGCgGAGUaCGcGCAGgccgugcgcgaaCUCCGCGAGc -3' miRNA: 3'- -CCGUGgCUCA-GC-CGUUa-----------GAGGCGCUU- -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 20119 | 0.7 | 0.651181 |
Target: 5'- aGGCGCgCGGGcCcGCAGcggCUCCGCGAGc -3' miRNA: 3'- -CCGUG-GCUCaGcCGUUa--GAGGCGCUU- -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 48774 | 0.7 | 0.651181 |
Target: 5'- cGGCccgaCGAGcUCGGCGAUCgccggcUCCGUGAGg -3' miRNA: 3'- -CCGug--GCUC-AGCCGUUAG------AGGCGCUU- -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 108433 | 0.7 | 0.651181 |
Target: 5'- cGGCaaccgcgucccgGCCGAgcagcgcgucGUCGGCGAggaUCUCCGCGu- -3' miRNA: 3'- -CCG------------UGGCU----------CAGCCGUU---AGAGGCGCuu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 75471 | 0.7 | 0.66143 |
Target: 5'- aGGCGCCGGG-CGGCGGcgCgggCCGCu-- -3' miRNA: 3'- -CCGUGGCUCaGCCGUUa-Ga--GGCGcuu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 4543 | 0.7 | 0.66143 |
Target: 5'- gGGCGCCGGGcccuggccUUGGCuggaUCCGCGGg -3' miRNA: 3'- -CCGUGGCUC--------AGCCGuuagAGGCGCUu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 109060 | 0.7 | 0.66143 |
Target: 5'- gGGCGCCGGGcccuggccUUGGCuggaUCCGCGGg -3' miRNA: 3'- -CCGUGGCUC--------AGCCGuuagAGGCGCUu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 78202 | 0.7 | 0.66143 |
Target: 5'- cGGCGCCGAcggCGGCGGgcUCUUCGUGu- -3' miRNA: 3'- -CCGUGGCUca-GCCGUU--AGAGGCGCuu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 23787 | 0.7 | 0.671655 |
Target: 5'- aGGUugUGGGUgcgcagguaGGCGAUCgCCGCGAAg -3' miRNA: 3'- -CCGugGCUCAg--------CCGUUAGaGGCGCUU- -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 60416 | 0.7 | 0.671655 |
Target: 5'- uGGUGCUGGGgCGGCAG-CUCgGCGGg -3' miRNA: 3'- -CCGUGGCUCaGCCGUUaGAGgCGCUu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 117601 | 0.69 | 0.681848 |
Target: 5'- cGGCgaACCGGGcCGGCAGUC-CCG-GAu -3' miRNA: 3'- -CCG--UGGCUCaGCCGUUAGaGGCgCUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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