miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23587 5' -56.7 NC_005261.1 + 60097 0.69 0.681848
Target:  5'- gGGCGCCGGGgCGGCGGgggUgGCGAGc -3'
miRNA:   3'- -CCGUGGCUCaGCCGUUagaGgCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 49256 0.69 0.681848
Target:  5'- cGCGgCGGcGUCGGCGcgCacgUCCGCGAGg -3'
miRNA:   3'- cCGUgGCU-CAGCCGUuaG---AGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 56541 0.69 0.681848
Target:  5'- cGGCGCCGGGcccggacgggCGGCAGUCgugCCccaGCGGc -3'
miRNA:   3'- -CCGUGGCUCa---------GCCGUUAGa--GG---CGCUu -5'
23587 5' -56.7 NC_005261.1 + 117601 0.69 0.681848
Target:  5'- cGGCgaACCGGGcCGGCAGUC-CCG-GAu -3'
miRNA:   3'- -CCG--UGGCUCaGCCGUUAGaGGCgCUu -5'
23587 5' -56.7 NC_005261.1 + 56721 0.69 0.702101
Target:  5'- uGGCGCCGGcggCGGCGcgCgcgCCGCGc- -3'
miRNA:   3'- -CCGUGGCUca-GCCGUuaGa--GGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 50999 0.69 0.712142
Target:  5'- cGGCGCgUGGGcgCGGCGGgagCUCgGCGAGc -3'
miRNA:   3'- -CCGUG-GCUCa-GCCGUUa--GAGgCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 106990 0.69 0.712142
Target:  5'- cGCACCGcGUCGGCcAggUCCGcCGAGc -3'
miRNA:   3'- cCGUGGCuCAGCCGuUagAGGC-GCUU- -5'
23587 5' -56.7 NC_005261.1 + 98212 0.69 0.716141
Target:  5'- gGGCGCCGccaCGGCAgcgcggcgggcaucgAUUUCCGCGGc -3'
miRNA:   3'- -CCGUGGCucaGCCGU---------------UAGAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 132063 0.69 0.722116
Target:  5'- uGGCgGCCGAGgucgCGGCcgccGUCgccgcugCCGCGGAg -3'
miRNA:   3'- -CCG-UGGCUCa---GCCGu---UAGa------GGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 67707 0.69 0.722116
Target:  5'- gGGCGCCGccgUGGCGAUCguccCCGUGGc -3'
miRNA:   3'- -CCGUGGCucaGCCGUUAGa---GGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 39237 0.68 0.732011
Target:  5'- cGCGCCGgcgaGGUcucCGGCGagGUCUCCaGCGAGg -3'
miRNA:   3'- cCGUGGC----UCA---GCCGU--UAGAGG-CGCUU- -5'
23587 5' -56.7 NC_005261.1 + 74889 0.68 0.732011
Target:  5'- cGGCgGCgGAGUCGGCGG-C-CCGCGc- -3'
miRNA:   3'- -CCG-UGgCUCAGCCGUUaGaGGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 101516 0.68 0.74182
Target:  5'- cGGUcCCGGGUagggcCGGCGGUCagCGCGGGg -3'
miRNA:   3'- -CCGuGGCUCA-----GCCGUUAGagGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 32078 0.68 0.74182
Target:  5'- cGGCGCUGGGgcUCGGgGAgccggaCUUCGCGGAg -3'
miRNA:   3'- -CCGUGGCUC--AGCCgUUa-----GAGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 37089 0.68 0.74182
Target:  5'- cGCGCCGccgcgCGGCAGcCUCgCGCGAGg -3'
miRNA:   3'- cCGUGGCuca--GCCGUUaGAG-GCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 45619 0.68 0.74182
Target:  5'- cGCGcCCGGGgcccCGGCAcgCgCCGCGAGc -3'
miRNA:   3'- cCGU-GGCUCa---GCCGUuaGaGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 136596 0.68 0.74182
Target:  5'- cGGCGCUGGGgcUCGGgGAgccggaCUUCGCGGAg -3'
miRNA:   3'- -CCGUGGCUC--AGCCgUUa-----GAGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 13291 0.68 0.749597
Target:  5'- gGGCGCCGGcacagcgcgcgCGGCGGagcCUCCGCGGc -3'
miRNA:   3'- -CCGUGGCUca---------GCCGUUa--GAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 75573 0.68 0.751531
Target:  5'- gGGCGCUGGG-CGGCGGcgcggcgcUCgcgcgcgCCGCGGAc -3'
miRNA:   3'- -CCGUGGCUCaGCCGUU--------AGa------GGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 127804 0.68 0.751531
Target:  5'- cGGCGCCGcGG-CGGCGGgccgcucgcgcUCgcggCCGCGAGc -3'
miRNA:   3'- -CCGUGGC-UCaGCCGUU-----------AGa---GGCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.