miRNA display CGI


Results 61 - 80 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23587 5' -56.7 NC_005261.1 + 75573 0.68 0.751531
Target:  5'- gGGCGCUGGG-CGGCGGcgcggcgcUCgcgcgcgCCGCGGAc -3'
miRNA:   3'- -CCGUGGCUCaGCCGUU--------AGa------GGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 108377 0.68 0.757308
Target:  5'- cGGCGCCGcgcGGcCGGCGAgcacggcgcgcagCUCgGCGAGc -3'
miRNA:   3'- -CCGUGGC---UCaGCCGUUa------------GAGgCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 3860 0.68 0.757308
Target:  5'- cGGCGCCGcgcGGcCGGCGAgcacggcgcgcagCUCgGCGAGc -3'
miRNA:   3'- -CCGUGGC---UCaGCCGUUa------------GAGgCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 21704 0.68 0.761137
Target:  5'- gGGCGCgGAG-CGGCGGgccUCgcgccgCCGCGGc -3'
miRNA:   3'- -CCGUGgCUCaGCCGUU---AGa-----GGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 98456 0.68 0.769684
Target:  5'- cGGCGCCcgcaaaauccgacGGG-CGGCcGUcCUCCGCGGg -3'
miRNA:   3'- -CCGUGG-------------CUCaGCCGuUA-GAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 110174 0.68 0.779995
Target:  5'- cGCGCCccccGGG-CGGCAGU-UCCGCGAc -3'
miRNA:   3'- cCGUGG----CUCaGCCGUUAgAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 21569 0.67 0.78831
Target:  5'- cGGCGCCGcggagcaGGUCGGCGG-CgggCgCGCGGg -3'
miRNA:   3'- -CCGUGGC-------UCAGCCGUUaGa--G-GCGCUu -5'
23587 5' -56.7 NC_005261.1 + 3034 0.67 0.789227
Target:  5'- uGCGCCGccUCGGCcaugCUCCGCGc- -3'
miRNA:   3'- cCGUGGCucAGCCGuua-GAGGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 33824 0.67 0.789227
Target:  5'- cGGCGCCGuuUCGGCGcgCUUuauggCGCGc- -3'
miRNA:   3'- -CCGUGGCucAGCCGUuaGAG-----GCGCuu -5'
23587 5' -56.7 NC_005261.1 + 16100 0.67 0.789227
Target:  5'- cGGCACCGGcggCGGCcacgcacgcGAUCaCCGCGGc -3'
miRNA:   3'- -CCGUGGCUca-GCCG---------UUAGaGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 70231 0.67 0.797415
Target:  5'- uGGCGCCGcGcgcaaacucgaccUCGGCGcgCuugUCCGCGAu -3'
miRNA:   3'- -CCGUGGCuC-------------AGCCGUuaG---AGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 120393 0.67 0.798318
Target:  5'- cGCACCGAGcagagCGGCG-UCUgCGCuGAGc -3'
miRNA:   3'- cCGUGGCUCa----GCCGUuAGAgGCG-CUU- -5'
23587 5' -56.7 NC_005261.1 + 69005 0.67 0.798318
Target:  5'- gGGCGCCGcggcuucGUUGGCGAg-UCCGUGGc -3'
miRNA:   3'- -CCGUGGCu------CAGCCGUUagAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 62392 0.67 0.798318
Target:  5'- cGGCACCGucGUgGGgAAgagcagCUCCGCGc- -3'
miRNA:   3'- -CCGUGGCu-CAgCCgUUa-----GAGGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 118409 0.67 0.807257
Target:  5'- gGGCGCCGcAGcCGcGCuggcuGUCgccgCCGCGGAc -3'
miRNA:   3'- -CCGUGGC-UCaGC-CGu----UAGa---GGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 55220 0.67 0.807257
Target:  5'- gGGCGCCGGcGaCGGCGG-CUCggugCGCGAGg -3'
miRNA:   3'- -CCGUGGCU-CaGCCGUUaGAG----GCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 75669 0.67 0.807257
Target:  5'- uGGCGCCGGGgcgcaugcuggCGGCGccUCUCgGCGu- -3'
miRNA:   3'- -CCGUGGCUCa----------GCCGUu-AGAGgCGCuu -5'
23587 5' -56.7 NC_005261.1 + 26381 0.67 0.807257
Target:  5'- aGGCGC--GGUUGGCGcgcacgcgCUCCGCGAc -3'
miRNA:   3'- -CCGUGgcUCAGCCGUua------GAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 12793 0.67 0.807257
Target:  5'- cGGCGagcUCGucGUCGGCGucgcugccGUcCUCCGCGAAg -3'
miRNA:   3'- -CCGU---GGCu-CAGCCGU--------UA-GAGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 103282 0.67 0.807257
Target:  5'- cGCGCCGGGUgccgCGcGCAGcC-CCGCGAAg -3'
miRNA:   3'- cCGUGGCUCA----GC-CGUUaGaGGCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.