Results 81 - 100 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23587 | 5' | -56.7 | NC_005261.1 | + | 69083 | 0.67 | 0.815166 |
Target: 5'- cGGCGCgGugcggguAGUUGGCGAcguagcUCUCgGCGAGg -3' miRNA: 3'- -CCGUGgC-------UCAGCCGUU------AGAGgCGCUU- -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 70833 | 0.67 | 0.816036 |
Target: 5'- cGGCGCUG-GUCcuGGCGcgcgcggcGUCUUCGCGGc -3' miRNA: 3'- -CCGUGGCuCAG--CCGU--------UAGAGGCGCUu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 55228 | 0.67 | 0.816036 |
Target: 5'- aGGCGgCGAGggCGGCAGcaccgcagCcgCCGCGAGg -3' miRNA: 3'- -CCGUgGCUCa-GCCGUUa-------Ga-GGCGCUU- -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 57907 | 0.67 | 0.816036 |
Target: 5'- cGGgGCCGcGGUCGaGCGcGUCUaCCGUGAGc -3' miRNA: 3'- -CCgUGGC-UCAGC-CGU-UAGA-GGCGCUU- -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 100967 | 0.67 | 0.816036 |
Target: 5'- cGGCACgGc-UCGGCcaggauGGUCUCCGCGc- -3' miRNA: 3'- -CCGUGgCucAGCCG------UUAGAGGCGCuu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 102471 | 0.67 | 0.824647 |
Target: 5'- aGGCGCCGGaccuccUCGGCGcgCcgCCGCGc- -3' miRNA: 3'- -CCGUGGCUc-----AGCCGUuaGa-GGCGCuu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 129326 | 0.67 | 0.824647 |
Target: 5'- uGGCGCCGcGUCGcCGAccUCgCCGCGGu -3' miRNA: 3'- -CCGUGGCuCAGCcGUU--AGaGGCGCUu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 115752 | 0.67 | 0.824647 |
Target: 5'- cGCACaCGucGUCGGCcccGUCUCgGCGGc -3' miRNA: 3'- cCGUG-GCu-CAGCCGu--UAGAGgCGCUu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 88049 | 0.67 | 0.833082 |
Target: 5'- uGCACCGGcugcugCGGCGGUgC-CCGCGGAu -3' miRNA: 3'- cCGUGGCUca----GCCGUUA-GaGGCGCUU- -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 132655 | 0.67 | 0.833082 |
Target: 5'- gGGCGCCc--UCGGCGcccccAUCUCCGCc-- -3' miRNA: 3'- -CCGUGGcucAGCCGU-----UAGAGGCGcuu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 74713 | 0.67 | 0.833082 |
Target: 5'- gGGCgcggaACCGGGccgCGGCAGcggCCGCGGAc -3' miRNA: 3'- -CCG-----UGGCUCa--GCCGUUagaGGCGCUU- -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 28137 | 0.67 | 0.833082 |
Target: 5'- gGGCGCCc--UCGGCGcccccAUCUCCGCc-- -3' miRNA: 3'- -CCGUGGcucAGCCGU-----UAGAGGCGcuu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 63871 | 0.67 | 0.833082 |
Target: 5'- cGCuCCGAGgccuucUCGGCGAagagcauguUCUCCGUGGc -3' miRNA: 3'- cCGuGGCUC------AGCCGUU---------AGAGGCGCUu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 54544 | 0.66 | 0.841332 |
Target: 5'- cGGCGCCGccucGG-CGGCGcgCUgCGCGc- -3' miRNA: 3'- -CCGUGGC----UCaGCCGUuaGAgGCGCuu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 60044 | 0.66 | 0.841332 |
Target: 5'- cGGCGCCGAcGgcggCGGCGAagagCggcggccggUCCGCGGg -3' miRNA: 3'- -CCGUGGCU-Ca---GCCGUUa---G---------AGGCGCUu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 55960 | 0.66 | 0.841332 |
Target: 5'- cGGCGCCGGGUCucccGCGAgcgCCGCc-- -3' miRNA: 3'- -CCGUGGCUCAGc---CGUUagaGGCGcuu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 117229 | 0.66 | 0.848594 |
Target: 5'- gGGCGCCGAGUCcgccucgGGUcgGGUCUcguucgCCGCGc- -3' miRNA: 3'- -CCGUGGCUCAG-------CCG--UUAGA------GGCGCuu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 137582 | 0.66 | 0.849391 |
Target: 5'- cGGCGCCGGGgacgCGGCGcuggCggCCGCc-- -3' miRNA: 3'- -CCGUGGCUCa---GCCGUua--Ga-GGCGcuu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 31600 | 0.66 | 0.849391 |
Target: 5'- cGuCGCCGAgcucGUCGcGCGG-CUCCGCGGc -3' miRNA: 3'- cC-GUGGCU----CAGC-CGUUaGAGGCGCUu -5' |
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23587 | 5' | -56.7 | NC_005261.1 | + | 137545 | 0.66 | 0.849391 |
Target: 5'- gGGCGCCGAugCGGag--CgUCCGCGGAg -3' miRNA: 3'- -CCGUGGCUcaGCCguuaG-AGGCGCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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