miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23587 5' -56.7 NC_005261.1 + 115291 0.66 0.849391
Target:  5'- gGGCagcaGCCGcaacgcGUCGGCGcacGUCUgCGCGAu -3'
miRNA:   3'- -CCG----UGGCu-----CAGCCGU---UAGAgGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 115859 0.66 0.849391
Target:  5'- cGGCccccGCCGAGgcgcgccCGGCAAUCUCCcucGCc-- -3'
miRNA:   3'- -CCG----UGGCUCa------GCCGUUAGAGG---CGcuu -5'
23587 5' -56.7 NC_005261.1 + 33027 0.66 0.849391
Target:  5'- gGGCGCCGAugCGGag--CgUCCGCGGAg -3'
miRNA:   3'- -CCGUGGCUcaGCCguuaG-AGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 31600 0.66 0.849391
Target:  5'- cGuCGCCGAgcucGUCGcGCGG-CUCCGCGGc -3'
miRNA:   3'- cC-GUGGCU----CAGC-CGUUaGAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 7034 0.66 0.849391
Target:  5'- cGCGCCG-G-CGGCGAcCgcgCCGCGGg -3'
miRNA:   3'- cCGUGGCuCaGCCGUUaGa--GGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 137582 0.66 0.849391
Target:  5'- cGGCGCCGGGgacgCGGCGcuggCggCCGCc-- -3'
miRNA:   3'- -CCGUGGCUCa---GCCGUua--Ga-GGCGcuu -5'
23587 5' -56.7 NC_005261.1 + 137545 0.66 0.849391
Target:  5'- gGGCGCCGAugCGGag--CgUCCGCGGAg -3'
miRNA:   3'- -CCGUGGCUcaGCCguuaG-AGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 96182 0.66 0.849391
Target:  5'- cGGCGCaCGAuUCGGCGcaGUa-CCGCGAc -3'
miRNA:   3'- -CCGUG-GCUcAGCCGU--UAgaGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 68625 0.66 0.849391
Target:  5'- gGGCGgCGGG-CGcGCGGUCgaaggCCGUGAGc -3'
miRNA:   3'- -CCGUgGCUCaGC-CGUUAGa----GGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 117229 0.66 0.848594
Target:  5'- gGGCGCCGAGUCcgccucgGGUcgGGUCUcguucgCCGCGc- -3'
miRNA:   3'- -CCGUGGCUCAG-------CCG--UUAGA------GGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 54544 0.66 0.841332
Target:  5'- cGGCGCCGccucGG-CGGCGcgCUgCGCGc- -3'
miRNA:   3'- -CCGUGGC----UCaGCCGUuaGAgGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 55960 0.66 0.841332
Target:  5'- cGGCGCCGGGUCucccGCGAgcgCCGCc-- -3'
miRNA:   3'- -CCGUGGCUCAGc---CGUUagaGGCGcuu -5'
23587 5' -56.7 NC_005261.1 + 60044 0.66 0.841332
Target:  5'- cGGCGCCGAcGgcggCGGCGAagagCggcggccggUCCGCGGg -3'
miRNA:   3'- -CCGUGGCU-Ca---GCCGUUa---G---------AGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 132655 0.67 0.833082
Target:  5'- gGGCGCCc--UCGGCGcccccAUCUCCGCc-- -3'
miRNA:   3'- -CCGUGGcucAGCCGU-----UAGAGGCGcuu -5'
23587 5' -56.7 NC_005261.1 + 88049 0.67 0.833082
Target:  5'- uGCACCGGcugcugCGGCGGUgC-CCGCGGAu -3'
miRNA:   3'- cCGUGGCUca----GCCGUUA-GaGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 28137 0.67 0.833082
Target:  5'- gGGCGCCc--UCGGCGcccccAUCUCCGCc-- -3'
miRNA:   3'- -CCGUGGcucAGCCGU-----UAGAGGCGcuu -5'
23587 5' -56.7 NC_005261.1 + 74713 0.67 0.833082
Target:  5'- gGGCgcggaACCGGGccgCGGCAGcggCCGCGGAc -3'
miRNA:   3'- -CCG-----UGGCUCa--GCCGUUagaGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 63871 0.67 0.833082
Target:  5'- cGCuCCGAGgccuucUCGGCGAagagcauguUCUCCGUGGc -3'
miRNA:   3'- cCGuGGCUC------AGCCGUU---------AGAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 115752 0.67 0.824647
Target:  5'- cGCACaCGucGUCGGCcccGUCUCgGCGGc -3'
miRNA:   3'- cCGUG-GCu-CAGCCGu--UAGAGgCGCUu -5'
23587 5' -56.7 NC_005261.1 + 129326 0.67 0.824647
Target:  5'- uGGCGCCGcGUCGcCGAccUCgCCGCGGu -3'
miRNA:   3'- -CCGUGGCuCAGCcGUU--AGaGGCGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.