miRNA display CGI


Results 81 - 100 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23587 5' -56.7 NC_005261.1 + 50999 0.69 0.712142
Target:  5'- cGGCGCgUGGGcgCGGCGGgagCUCgGCGAGc -3'
miRNA:   3'- -CCGUG-GCUCa-GCCGUUa--GAGgCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 56721 0.69 0.702101
Target:  5'- uGGCGCCGGcggCGGCGcgCgcgCCGCGc- -3'
miRNA:   3'- -CCGUGGCUca-GCCGUuaGa--GGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 49256 0.69 0.681848
Target:  5'- cGCGgCGGcGUCGGCGcgCacgUCCGCGAGg -3'
miRNA:   3'- cCGUgGCU-CAGCCGUuaG---AGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 60097 0.69 0.681848
Target:  5'- gGGCGCCGGGgCGGCGGgggUgGCGAGc -3'
miRNA:   3'- -CCGUGGCUCaGCCGUUagaGgCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 56541 0.69 0.681848
Target:  5'- cGGCGCCGGGcccggacgggCGGCAGUCgugCCccaGCGGc -3'
miRNA:   3'- -CCGUGGCUCa---------GCCGUUAGa--GG---CGCUu -5'
23587 5' -56.7 NC_005261.1 + 37139 0.69 0.681848
Target:  5'- uGGCACCGAGUggcaUGGCAccagcgCUCgCGCGc- -3'
miRNA:   3'- -CCGUGGCUCA----GCCGUua----GAG-GCGCuu -5'
23587 5' -56.7 NC_005261.1 + 117601 0.69 0.681848
Target:  5'- cGGCgaACCGGGcCGGCAGUC-CCG-GAu -3'
miRNA:   3'- -CCG--UGGCUCaGCCGUUAGaGGCgCUu -5'
23587 5' -56.7 NC_005261.1 + 60416 0.7 0.671655
Target:  5'- uGGUGCUGGGgCGGCAG-CUCgGCGGg -3'
miRNA:   3'- -CCGUGGCUCaGCCGUUaGAGgCGCUu -5'
23587 5' -56.7 NC_005261.1 + 23787 0.7 0.671655
Target:  5'- aGGUugUGGGUgcgcagguaGGCGAUCgCCGCGAAg -3'
miRNA:   3'- -CCGugGCUCAg--------CCGUUAGaGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 78202 0.7 0.66143
Target:  5'- cGGCGCCGAcggCGGCGGgcUCUUCGUGu- -3'
miRNA:   3'- -CCGUGGCUca-GCCGUU--AGAGGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 109060 0.7 0.66143
Target:  5'- gGGCGCCGGGcccuggccUUGGCuggaUCCGCGGg -3'
miRNA:   3'- -CCGUGGCUC--------AGCCGuuagAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 75471 0.7 0.66143
Target:  5'- aGGCGCCGGG-CGGCGGcgCgggCCGCu-- -3'
miRNA:   3'- -CCGUGGCUCaGCCGUUa-Ga--GGCGcuu -5'
23587 5' -56.7 NC_005261.1 + 4543 0.7 0.66143
Target:  5'- gGGCGCCGGGcccuggccUUGGCuggaUCCGCGGg -3'
miRNA:   3'- -CCGUGGCUC--------AGCCGuuagAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 108433 0.7 0.651181
Target:  5'- cGGCaaccgcgucccgGCCGAgcagcgcgucGUCGGCGAggaUCUCCGCGu- -3'
miRNA:   3'- -CCG------------UGGCU----------CAGCCGUU---AGAGGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 48774 0.7 0.651181
Target:  5'- cGGCccgaCGAGcUCGGCGAUCgccggcUCCGUGAGg -3'
miRNA:   3'- -CCGug--GCUC-AGCCGUUAG------AGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 20119 0.7 0.651181
Target:  5'- aGGCGCgCGGGcCcGCAGcggCUCCGCGAGc -3'
miRNA:   3'- -CCGUG-GCUCaGcCGUUa--GAGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 51368 0.7 0.638863
Target:  5'- cGGCGCgGAGUaCGcGCAGgccgugcgcgaaCUCCGCGAGc -3'
miRNA:   3'- -CCGUGgCUCA-GC-CGUUa-----------GAGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 97501 0.7 0.637836
Target:  5'- gGGCGCCGGGgccgccggaacguuUCGGC--UCgCCGCGAu -3'
miRNA:   3'- -CCGUGGCUC--------------AGCCGuuAGaGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 110309 0.7 0.630646
Target:  5'- cGcCGCCGAGUaCGGCAAccgCgccgCCGCGGAc -3'
miRNA:   3'- cC-GUGGCUCA-GCCGUUa--Ga---GGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 85562 0.7 0.620376
Target:  5'- cGGCGCCGcgaGGuUCGGCGccgcgaccgcgGcCUCCGCGAGc -3'
miRNA:   3'- -CCGUGGC---UC-AGCCGU-----------UaGAGGCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.