miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23587 5' -56.7 NC_005261.1 + 665 0.82 0.149726
Target:  5'- cGGCGCCGAGUCcuGGCc--CUCCGCGGAc -3'
miRNA:   3'- -CCGUGGCUCAG--CCGuuaGAGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 3034 0.67 0.789227
Target:  5'- uGCGCCGccUCGGCcaugCUCCGCGc- -3'
miRNA:   3'- cCGUGGCucAGCCGuua-GAGGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 3860 0.68 0.757308
Target:  5'- cGGCGCCGcgcGGcCGGCGAgcacggcgcgcagCUCgGCGAGc -3'
miRNA:   3'- -CCGUGGC---UCaGCCGUUa------------GAGgCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 4530 0.74 0.434368
Target:  5'- cGGCGCCgGGGUCGcGCAG-CUCCcaGCGGAg -3'
miRNA:   3'- -CCGUGG-CUCAGC-CGUUaGAGG--CGCUU- -5'
23587 5' -56.7 NC_005261.1 + 4543 0.7 0.66143
Target:  5'- gGGCGCCGGGcccuggccUUGGCuggaUCCGCGGg -3'
miRNA:   3'- -CCGUGGCUC--------AGCCGuuagAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 5058 0.66 0.849391
Target:  5'- cGGCGCCGcgguuGUCGGCGG-CgacgCCGaCGGc -3'
miRNA:   3'- -CCGUGGCu----CAGCCGUUaGa---GGC-GCUu -5'
23587 5' -56.7 NC_005261.1 + 7034 0.66 0.849391
Target:  5'- cGCGCCG-G-CGGCGAcCgcgCCGCGGg -3'
miRNA:   3'- cCGUGGCuCaGCCGUUaGa--GGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 12793 0.67 0.807257
Target:  5'- cGGCGagcUCGucGUCGGCGucgcugccGUcCUCCGCGAAg -3'
miRNA:   3'- -CCGU---GGCu-CAGCCGU--------UA-GAGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 13096 0.66 0.864907
Target:  5'- gGGCGgCGGGcUCGGCucgggggcGUCggcggCCGCGGGg -3'
miRNA:   3'- -CCGUgGCUC-AGCCGu-------UAGa----GGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 13291 0.68 0.749597
Target:  5'- gGGCGCCGGcacagcgcgcgCGGCGGagcCUCCGCGGc -3'
miRNA:   3'- -CCGUGGCUca---------GCCGUUa--GAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 16100 0.67 0.789227
Target:  5'- cGGCACCGGcggCGGCcacgcacgcGAUCaCCGCGGc -3'
miRNA:   3'- -CCGUGGCUca-GCCG---------UUAGaGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 20114 0.66 0.864151
Target:  5'- cGGCG-CGAGcCGGCGgcgcagcGUCUgCGCGGc -3'
miRNA:   3'- -CCGUgGCUCaGCCGU-------UAGAgGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 20119 0.7 0.651181
Target:  5'- aGGCGCgCGGGcCcGCAGcggCUCCGCGAGc -3'
miRNA:   3'- -CCGUG-GCUCaGcCGUUa--GAGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 21569 0.67 0.78831
Target:  5'- cGGCGCCGcggagcaGGUCGGCGG-CgggCgCGCGGg -3'
miRNA:   3'- -CCGUGGC-------UCAGCCGUUaGa--G-GCGCUu -5'
23587 5' -56.7 NC_005261.1 + 21704 0.68 0.761137
Target:  5'- gGGCGCgGAG-CGGCGGgccUCgcgccgCCGCGGc -3'
miRNA:   3'- -CCGUGgCUCaGCCGUU---AGa-----GGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 23787 0.7 0.671655
Target:  5'- aGGUugUGGGUgcgcagguaGGCGAUCgCCGCGAAg -3'
miRNA:   3'- -CCGugGCUCAg--------CCGUUAGaGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 26381 0.67 0.807257
Target:  5'- aGGCGC--GGUUGGCGcgcacgcgCUCCGCGAc -3'
miRNA:   3'- -CCGUGgcUCAGCCGUua------GAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 28137 0.67 0.833082
Target:  5'- gGGCGCCc--UCGGCGcccccAUCUCCGCc-- -3'
miRNA:   3'- -CCGUGGcucAGCCGU-----UAGAGGCGcuu -5'
23587 5' -56.7 NC_005261.1 + 31600 0.66 0.849391
Target:  5'- cGuCGCCGAgcucGUCGcGCGG-CUCCGCGGc -3'
miRNA:   3'- cC-GUGGCU----CAGC-CGUUaGAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 32078 0.68 0.74182
Target:  5'- cGGCGCUGGGgcUCGGgGAgccggaCUUCGCGGAg -3'
miRNA:   3'- -CCGUGGCUC--AGCCgUUa-----GAGGCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.