miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23587 5' -56.7 NC_005261.1 + 49256 0.69 0.681848
Target:  5'- cGCGgCGGcGUCGGCGcgCacgUCCGCGAGg -3'
miRNA:   3'- cCGUgGCU-CAGCCGUuaG---AGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 49683 0.68 0.751531
Target:  5'- cGGCGCuCGGGuacUCGGUcGUCUCCaCGAu -3'
miRNA:   3'- -CCGUG-GCUC---AGCCGuUAGAGGcGCUu -5'
23587 5' -56.7 NC_005261.1 + 50999 0.69 0.712142
Target:  5'- cGGCGCgUGGGcgCGGCGGgagCUCgGCGAGc -3'
miRNA:   3'- -CCGUG-GCUCa-GCCGUUa--GAGgCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 51368 0.7 0.638863
Target:  5'- cGGCGCgGAGUaCGcGCAGgccgugcgcgaaCUCCGCGAGc -3'
miRNA:   3'- -CCGUGgCUCA-GC-CGUUa-----------GAGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 54544 0.66 0.841332
Target:  5'- cGGCGCCGccucGG-CGGCGcgCUgCGCGc- -3'
miRNA:   3'- -CCGUGGC----UCaGCCGUuaGAgGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 55220 0.67 0.807257
Target:  5'- gGGCGCCGGcGaCGGCGG-CUCggugCGCGAGg -3'
miRNA:   3'- -CCGUGGCU-CaGCCGUUaGAG----GCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 55228 0.67 0.816036
Target:  5'- aGGCGgCGAGggCGGCAGcaccgcagCcgCCGCGAGg -3'
miRNA:   3'- -CCGUgGCUCa-GCCGUUa-------Ga-GGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 55960 0.66 0.841332
Target:  5'- cGGCGCCGGGUCucccGCGAgcgCCGCc-- -3'
miRNA:   3'- -CCGUGGCUCAGc---CGUUagaGGCGcuu -5'
23587 5' -56.7 NC_005261.1 + 56541 0.69 0.681848
Target:  5'- cGGCGCCGGGcccggacgggCGGCAGUCgugCCccaGCGGc -3'
miRNA:   3'- -CCGUGGCUCa---------GCCGUUAGa--GG---CGCUu -5'
23587 5' -56.7 NC_005261.1 + 56721 0.69 0.702101
Target:  5'- uGGCGCCGGcggCGGCGcgCgcgCCGCGc- -3'
miRNA:   3'- -CCGUGGCUca-GCCGUuaGa--GGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 57421 0.71 0.559203
Target:  5'- cGGCGCUGGGcUCGGCGGggcUCUaCCGCa-- -3'
miRNA:   3'- -CCGUGGCUC-AGCCGUU---AGA-GGCGcuu -5'
23587 5' -56.7 NC_005261.1 + 57907 0.67 0.816036
Target:  5'- cGGgGCCGcGGUCGaGCGcGUCUaCCGUGAGc -3'
miRNA:   3'- -CCgUGGC-UCAGC-CGU-UAGA-GGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 60044 0.66 0.841332
Target:  5'- cGGCGCCGAcGgcggCGGCGAagagCggcggccggUCCGCGGg -3'
miRNA:   3'- -CCGUGGCU-Ca---GCCGUUa---G---------AGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 60097 0.69 0.681848
Target:  5'- gGGCGCCGGGgCGGCGGgggUgGCGAGc -3'
miRNA:   3'- -CCGUGGCUCaGCCGUUagaGgCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 60416 0.7 0.671655
Target:  5'- uGGUGCUGGGgCGGCAG-CUCgGCGGg -3'
miRNA:   3'- -CCGUGGCUCaGCCGUUaGAGgCGCUu -5'
23587 5' -56.7 NC_005261.1 + 60584 0.66 0.857252
Target:  5'- aGGCGCCGGccGUCGGCGAUggcgCCGg--- -3'
miRNA:   3'- -CCGUGGCU--CAGCCGUUAga--GGCgcuu -5'
23587 5' -56.7 NC_005261.1 + 62298 0.66 0.857252
Target:  5'- cGGCGCCGcgcGGgcgcgCGGCGGcC-CCGCGGu -3'
miRNA:   3'- -CCGUGGC---UCa----GCCGUUaGaGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 62392 0.67 0.798318
Target:  5'- cGGCACCGucGUgGGgAAgagcagCUCCGCGc- -3'
miRNA:   3'- -CCGUGGCu-CAgCCgUUa-----GAGGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 63871 0.67 0.833082
Target:  5'- cGCuCCGAGgccuucUCGGCGAagagcauguUCUCCGUGGc -3'
miRNA:   3'- cCGuGGCUC------AGCCGUU---------AGAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 67707 0.69 0.722116
Target:  5'- gGGCGCCGccgUGGCGAUCguccCCGUGGc -3'
miRNA:   3'- -CCGUGGCucaGCCGUUAGa---GGCGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.