miRNA display CGI


Results 61 - 80 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23587 5' -56.7 NC_005261.1 + 68625 0.66 0.849391
Target:  5'- gGGCGgCGGG-CGcGCGGUCgaaggCCGUGAGc -3'
miRNA:   3'- -CCGUgGCUCaGC-CGUUAGa----GGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 69005 0.67 0.798318
Target:  5'- gGGCGCCGcggcuucGUUGGCGAg-UCCGUGGc -3'
miRNA:   3'- -CCGUGGCu------CAGCCGUUagAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 69083 0.67 0.815166
Target:  5'- cGGCGCgGugcggguAGUUGGCGAcguagcUCUCgGCGAGg -3'
miRNA:   3'- -CCGUGgC-------UCAGCCGUU------AGAGgCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 70231 0.67 0.797415
Target:  5'- uGGCGCCGcGcgcaaacucgaccUCGGCGcgCuugUCCGCGAu -3'
miRNA:   3'- -CCGUGGCuC-------------AGCCGUuaG---AGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 70648 0.72 0.549147
Target:  5'- cGGCGCUGAGguUCGGCGccgCggCCGCGGg -3'
miRNA:   3'- -CCGUGGCUC--AGCCGUua-Ga-GGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 70833 0.67 0.816036
Target:  5'- cGGCGCUG-GUCcuGGCGcgcgcggcGUCUUCGCGGc -3'
miRNA:   3'- -CCGUGGCuCAG--CCGU--------UAGAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 71504 0.66 0.857252
Target:  5'- uGCGCgCGAaaGUCGGCGGgcUCgUCCGCGu- -3'
miRNA:   3'- cCGUG-GCU--CAGCCGUU--AG-AGGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 72575 0.74 0.407001
Target:  5'- gGGCGCCGAGUCccaagagGGCGAUCggCGCGc- -3'
miRNA:   3'- -CCGUGGCUCAG-------CCGUUAGagGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 74050 0.72 0.529212
Target:  5'- cGCGCCGGGgggcugCGGCAG-CUgCGCGAc -3'
miRNA:   3'- cCGUGGCUCa-----GCCGUUaGAgGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 74248 0.66 0.857252
Target:  5'- cGCGCCGAGUacgucccauucgCGcGCGcgCgUCCGCGGc -3'
miRNA:   3'- cCGUGGCUCA------------GC-CGUuaG-AGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 74713 0.67 0.833082
Target:  5'- gGGCgcggaACCGGGccgCGGCAGcggCCGCGGAc -3'
miRNA:   3'- -CCG-----UGGCUCa--GCCGUUagaGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 74889 0.68 0.732011
Target:  5'- cGGCgGCgGAGUCGGCGG-C-CCGCGc- -3'
miRNA:   3'- -CCG-UGgCUCAGCCGUUaGaGGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 75471 0.7 0.66143
Target:  5'- aGGCGCCGGG-CGGCGGcgCgggCCGCu-- -3'
miRNA:   3'- -CCGUGGCUCaGCCGUUa-Ga--GGCGcuu -5'
23587 5' -56.7 NC_005261.1 + 75573 0.68 0.751531
Target:  5'- gGGCGCUGGG-CGGCGGcgcggcgcUCgcgcgcgCCGCGGAc -3'
miRNA:   3'- -CCGUGGCUCaGCCGUU--------AGa------GGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 75669 0.67 0.807257
Target:  5'- uGGCGCCGGGgcgcaugcuggCGGCGccUCUCgGCGu- -3'
miRNA:   3'- -CCGUGGCUCa----------GCCGUu-AGAGgCGCuu -5'
23587 5' -56.7 NC_005261.1 + 78202 0.7 0.66143
Target:  5'- cGGCGCCGAcggCGGCGGgcUCUUCGUGu- -3'
miRNA:   3'- -CCGUGGCUca-GCCGUU--AGAGGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 79418 0.71 0.579461
Target:  5'- aGGC-CCGuGUCGGCGAgCUCgGCGc- -3'
miRNA:   3'- -CCGuGGCuCAGCCGUUaGAGgCGCuu -5'
23587 5' -56.7 NC_005261.1 + 85562 0.7 0.620376
Target:  5'- cGGCGCCGcgaGGuUCGGCGccgcgaccgcgGcCUCCGCGAGc -3'
miRNA:   3'- -CCGUGGC---UC-AGCCGU-----------UaGAGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 87445 0.72 0.509549
Target:  5'- cGGCGCCGGGgCGGCcgccgCCGCGGu -3'
miRNA:   3'- -CCGUGGCUCaGCCGuuagaGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 88049 0.67 0.833082
Target:  5'- uGCACCGGcugcugCGGCGGUgC-CCGCGGAu -3'
miRNA:   3'- cCGUGGCUca----GCCGUUA-GaGGCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.