miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23587 5' -56.7 NC_005261.1 + 115752 0.67 0.824647
Target:  5'- cGCACaCGucGUCGGCcccGUCUCgGCGGc -3'
miRNA:   3'- cCGUG-GCu-CAGCCGu--UAGAGgCGCUu -5'
23587 5' -56.7 NC_005261.1 + 115291 0.66 0.849391
Target:  5'- gGGCagcaGCCGcaacgcGUCGGCGcacGUCUgCGCGAu -3'
miRNA:   3'- -CCG----UGGCu-----CAGCCGU---UAGAgGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 112125 0.66 0.872352
Target:  5'- cGGCGCUGuacCGGCAgcuaGUCgugcCCGCGAc -3'
miRNA:   3'- -CCGUGGCucaGCCGU----UAGa---GGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 110309 0.7 0.630646
Target:  5'- cGcCGCCGAGUaCGGCAAccgCgccgCCGCGGAc -3'
miRNA:   3'- cC-GUGGCUCA-GCCGUUa--Ga---GGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 110174 0.68 0.779995
Target:  5'- cGCGCCccccGGG-CGGCAGU-UCCGCGAc -3'
miRNA:   3'- cCGUGG----CUCaGCCGUUAgAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 109060 0.7 0.66143
Target:  5'- gGGCGCCGGGcccuggccUUGGCuggaUCCGCGGg -3'
miRNA:   3'- -CCGUGGCUC--------AGCCGuuagAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 108626 1.08 0.002324
Target:  5'- cGGCACCGAGUCGGCAAUCUCCGCGAAg -3'
miRNA:   3'- -CCGUGGCUCAGCCGUUAGAGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 108433 0.7 0.651181
Target:  5'- cGGCaaccgcgucccgGCCGAgcagcgcgucGUCGGCGAggaUCUCCGCGu- -3'
miRNA:   3'- -CCG------------UGGCU----------CAGCCGUU---AGAGGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 108377 0.68 0.757308
Target:  5'- cGGCGCCGcgcGGcCGGCGAgcacggcgcgcagCUCgGCGAGc -3'
miRNA:   3'- -CCGUGGC---UCaGCCGUUa------------GAGgCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 106990 0.69 0.712142
Target:  5'- cGCACCGcGUCGGCcAggUCCGcCGAGc -3'
miRNA:   3'- cCGUGGCuCAGCCGuUagAGGC-GCUU- -5'
23587 5' -56.7 NC_005261.1 + 105182 0.82 0.149726
Target:  5'- cGGCGCCGAGUCcuGGCc--CUCCGCGGAc -3'
miRNA:   3'- -CCGUGGCUCAG--CCGuuaGAGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 103506 0.72 0.529212
Target:  5'- cGGCGCCGcGGaCGGCGGcgUCCGCGGc -3'
miRNA:   3'- -CCGUGGC-UCaGCCGUUagAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 103282 0.67 0.807257
Target:  5'- cGCGCCGGGUgccgCGcGCAGcC-CCGCGAAg -3'
miRNA:   3'- cCGUGGCUCA----GC-CGUUaGaGGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 102471 0.67 0.824647
Target:  5'- aGGCGCCGGaccuccUCGGCGcgCcgCCGCGc- -3'
miRNA:   3'- -CCGUGGCUc-----AGCCGUuaGa-GGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 101516 0.68 0.74182
Target:  5'- cGGUcCCGGGUagggcCGGCGGUCagCGCGGGg -3'
miRNA:   3'- -CCGuGGCUCA-----GCCGUUAGagGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 101144 0.66 0.864907
Target:  5'- aGGCuGCCGcgcGG-CGGCGcgCcgCCGCGAAg -3'
miRNA:   3'- -CCG-UGGC---UCaGCCGUuaGa-GGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 100967 0.67 0.816036
Target:  5'- cGGCACgGc-UCGGCcaggauGGUCUCCGCGc- -3'
miRNA:   3'- -CCGUGgCucAGCCG------UUAGAGGCGCuu -5'
23587 5' -56.7 NC_005261.1 + 98911 0.66 0.849391
Target:  5'- -aCAgCGGGUCGGCGggGUCggCUGCGGGg -3'
miRNA:   3'- ccGUgGCUCAGCCGU--UAGa-GGCGCUU- -5'
23587 5' -56.7 NC_005261.1 + 98456 0.68 0.769684
Target:  5'- cGGCGCCcgcaaaauccgacGGG-CGGCcGUcCUCCGCGGg -3'
miRNA:   3'- -CCGUGG-------------CUCaGCCGuUA-GAGGCGCUu -5'
23587 5' -56.7 NC_005261.1 + 98212 0.69 0.716141
Target:  5'- gGGCGCCGccaCGGCAgcgcggcgggcaucgAUUUCCGCGGc -3'
miRNA:   3'- -CCGUGGCucaGCCGU---------------UAGAGGCGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.